New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	49 (1.010)	44/276	0.1	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

AATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC  >  NC_000913/1299357‑1299638                                                                                                                                              |                                                                                                                                             aaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAa                                                                                                                                             <  1:225657‑M1/143‑2 (MQ=255) aaTTACAGTTAGTTATAAGGACTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAa                                                                                                                                             <  1:410402‑M1/143‑2 (MQ=255)   ttACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAACTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                                                                                                           <  2:475109‑M1/143‑4 (MQ=255)   ttACAGGTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                                                                                                           <  2:798716‑M1/143‑4 (MQ=255)        gttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataat                                                                                                                                      >  1:575015‑M1/1‑135 (MQ=255)                taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTATAGGAAAGTGCTAAataataatcaattgtt                                                                                                                              >  2:83741‑M1/1‑127 (MQ=255)                 aaGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtta                                                                                                                             >  2:714466‑M1/1‑126 (MQ=255)                   ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                                                                                                           >  1:606830‑M1/1‑124 (MQ=255)                        tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTGAataataatcaattgttagattatt                                                                                                                      >  1:303696‑M1/1‑119 (MQ=255)                                 gCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                                                                                             >  2:119506‑M1/1‑110 (MQ=255)                                   ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatgatggtgcattccac                                                                                                           >  1:805325‑M1/1‑108 (MQ=255)                                        ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                      <  1:773788‑M1/143‑41 (MQ=255)                                           gccaTCATGTGATTTTAGCCAAATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                   <  2:829572‑M1/142‑44 (MQ=255)                                           aCCATTATGCTTCTTCCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                   <  2:182325‑M1/143‑44 (MQ=255)                                            ccATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaac                                                                                                  <  1:525138‑M1/143‑45 (MQ=255)                                            ccATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGCAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaac                                                                                                  <  1:472464‑M1/143‑45 (MQ=255)                                                catGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgta                                                                                              <  1:8559‑M1/143‑49 (MQ=255)                                                  tGTTCTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                            <  1:194494‑M1/143‑51 (MQ=255)                                                  tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgaaaatgtaat                                                                                            >  2:661200‑M1/1‑93 (MQ=255)                                                    ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggcactgtaatca                                                                                          >  1:37960‑M1/1‑91 (MQ=255)                                                     tATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaagttgttgtgcatttcactactggaactggaatcag                                                                                         >  1:408495‑M1/1‑90 (MQ=255)                                                     tATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcag                                                                                         <  1:668065‑M1/143‑54 (MQ=255)                                                      aTTTTCACCACATCATCATCCTGAGCTTGCTGAAGAAGAATTGACATGATATTATGAAGTCCACGGCCGTTGGTAGAGGAAAGCGCTAAataatgatcaattgttaaattattgtgcatttcactactggaactgtaatcaga                                                                                        <  2:686840‑M1/143‑55 (MQ=255)                                                       ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                       >  1:150113‑M1/1‑88 (MQ=255)                                                           cGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaaga                                                                                   >  1:52133‑M1/1‑84 (MQ=255)                                                            accaCATGATAATCCTTGGCTTGTTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagat                                                                                  <  2:231018‑M1/142‑61 (MQ=255)                                                             ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                 <  1:596328‑M1/143‑62 (MQ=255)                                                                        tCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaacagatagacatgattag                                                                      >  2:477156‑M1/1‑71 (MQ=255)                                                                         ccTGGGCTTGCTGAAGAATAATTCAAATGATATTATTAATTCCACTGTCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagc                                                                     <  2:11533‑M1/143‑74 (MQ=255)                                                                            gggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagccatgcttacccaa                                                                  >  2:327658‑M1/1‑67 (MQ=255)                                                                              gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatc                                                                >  2:407913‑M1/1‑65 (MQ=255)                                                                               cTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatct                                                               <  1:119506‑M1/143‑80 (MQ=255)                                                                                 tGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctct                                                             <  1:866216‑M1/143‑82 (MQ=255)                                                                                  gCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattccactactggtactgtaatcagaaaagatagacatgcttagccatactcta                                                            >  2:500433‑M1/1‑61 (MQ=255)                                                                                    tGAAGAATAATTGCAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagctagacatgcttagccaatctctata                                                          >  2:154314‑M1/1‑59 (MQ=255)                                                                                        gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttcaattattttgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaattgctatttgat                                                      >  2:791112‑M1/1‑55 (MQ=255)                                                                                            aatTGATATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgtaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                  <  2:390364‑M1/143‑93 (MQ=255)                                                                                             atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattagtgatttacttactcctccaacattaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                 >  2:642659‑M1/1‑50 (MQ=255)                                                                                              ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatt                                                <  2:575015‑M1/143‑95 (MQ=255)                                                                                                 aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                             <  2:767838‑M1/143‑98 (MQ=255)                                                                                                  aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAatgataatcaattgttaaattattgtgcatttcactactggaactataatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                            <  2:92043‑M1/143‑99 (MQ=255)                                                                                                  aaTGATATTATTAATACCACTGCCTTTGGTAGAGGAAAGTGCTAAataatacaaaaatgtttagttattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                            <  2:787283‑M1/143‑99 (MQ=255)                                                                                                     gATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagat                                         <  1:89642‑M1/143‑102 (MQ=255)                                                                                                           attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgt                                   >  1:241539‑M1/1‑36 (MQ=255)                                                                                                              aaTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttcaattattgtgcatttcactactcgaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgacttgaaagatgttcgttac                                >  2:309572‑M1/1‑33 (MQ=255)                                                                                                                    aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatg                          <  2:52133‑M1/143‑117 (MQ=255)                                                                                                                      tGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgga                        <  1:355982‑M1/143‑119 (MQ=255)                                                                                                                                  agGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatag            <  1:217090‑M1/143‑131 (MQ=255)                                                                                                                                      aaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc        <  2:118673‑M1/143‑135 (MQ=255)                                                                                                                                           cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgacttgaaagatgtttgttaaggcatggcggcaagctaaagattctcata   >  1:282647‑M1/1‑4 (MQ=255)                                                                                                                                            tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagagatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatcc  >  1:351926‑M1/1‑3 (MQ=255)                                                                                                                                              |                                                                                                                                             AATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC  >  NC_000913/1299357‑1299638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.