New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	49 (1.010)	44/276	0.1	100%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

GATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGT  >  NC_000913/1300556‑1300840                                                                                                                                               |                                                                                                                                                aattacagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaa                                                                                                                                                 <  1:225657‑M2/1‑1 (MQ=255) aattacagttagttataaggacttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaa                                                                                                                                                 <  1:410402‑M2/1‑1 (MQ=255)   ttacagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataactgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata                                                                                                                                               <  2:475109‑M2/3‑1 (MQ=255)   ttacaggtagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata                                                                                                                                               <  2:798716‑M2/3‑1 (MQ=255)        gttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataataat                                                                                                                                          >  1:575015‑M2/136‑143 (MQ=255)                taaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtataggaaagtgctaaATAATAATCAATTGtt                                                                                                                                  >  2:83741‑M2/128‑143 (MQ=255)                 aaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTa                                                                                                                                 >  2:714466‑M2/127‑143 (MQ=255)                   ggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTaaa                                                                                                                               >  1:606830‑M2/125‑143 (MQ=255)                        tccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctgaATAATAATCAATTGTTAGattatt                                                                                                                          >  1:303696‑M2/120‑143 (MQ=255)                                 gcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTc                                                                                                                >  2:119506‑M2/111‑143 (MQ=255)                                   ttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATGATGG‑TGCATTCCac                                                                                                              >  1:805325‑M2/109‑143 (MQ=255)                                        ctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTg                                                                                                         <  1:773788‑M2/40‑1 (MQ=255)                                           gccatcatgtgattttagccaaatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGaa                                                                                                      <  2:829572‑M2/43‑1 (MQ=255)                                           accattatgcttcttccgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGaa                                                                                                      <  2:182325‑M2/43‑1 (MQ=255)                                            ccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAAc                                                                                                     <  1:525138‑M2/44‑1 (MQ=255)                                            ccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagagcaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAAc                                                                                                     <  1:472464‑M2/44‑1 (MQ=255)                                                catgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTa                                                                                                 <  1:8559‑M2/48‑1 (MQ=255)                                                  tgttcttttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAAt                                                                                               <  1:194494‑M2/50‑1 (MQ=255)                                                  tgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGAAAATGTAAt                                                                                               >  2:661200‑M2/94‑143 (MQ=255)                                                    ttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGCACTGTAATCa                                                                                             >  1:37960‑M2/92‑143 (MQ=255)                                                     tattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAGTTGTTG‑TGCATTTCACTACTGGAACTGGAATCAg                                                                                            >  1:408495‑M2/91‑143 (MQ=255)                                                     tattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAg                                                                                            <  1:668065‑M2/53‑1 (MQ=255)                                                      attttcaccacatcatcatcctgagcttgctgaagaagaattgacatgatattatgaagtccacggccgttggtagaggaaagcgctaaATAATGATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGa                                                                                           <  2:686840‑M2/54‑1 (MQ=255)                                                       ttttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGaa                                                                                          >  1:150113‑M2/89‑143 (MQ=255)                                                           cgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGa                                                                                      >  1:52133‑M2/85‑143 (MQ=255)                                                            accacatgataatccttggcttgttgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGAt                                                                                     <  2:231018‑M2/60‑1 (MQ=255)                                                             ccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATa                                                                                    <  1:596328‑M2/61‑1 (MQ=255)                                                                        tcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAACAGATAGACATGATTAg                                                                         >  2:477156‑M2/72‑143 (MQ=255)                                                                         cctgggcttgctgaagaataattcaaatgatattattaattccactgtctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGc                                                                        <  2:11533‑M2/73‑1 (MQ=255)                                                                            gggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGCCATGCTTACCCaa                                                                     >  2:327658‑M2/68‑143 (MQ=255)                                                                              gcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAtc                                                                   >  2:407913‑M2/66‑143 (MQ=255)                                                                               cttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAtct                                                                  <  1:119506‑M2/79‑1 (MQ=255)                                                                                 tgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATctct                                                                <  1:866216‑M2/81‑1 (MQ=255)                                                                                  gctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTCCACTACTGGTACTGTAATCAGAAAAGATAGACATGCTTAGCCATACTCTa                                                               >  2:500433‑M2/62‑143 (MQ=255)                                                                                    tgaagaataattgcaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGCTAGACATGCTTAGCCAATCTCTata                                                             >  2:154314‑M2/60‑142 (MQ=255)                                                                                        gaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTCAATTATTT‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATTGCTATttgat                                                         >  2:791112‑M2/56‑143 (MQ=255)                                                                                            aattgatatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGTAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaa                                                     <  2:390364‑M2/92‑1 (MQ=255)                                                                                             attgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTAGTGATTTACTT‑ACTCCTCCAACATTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaat                                                    >  2:642659‑M2/51‑143 (MQ=255)                                                                                              ttgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGattgaatt                                                   <  2:575015‑M2/94‑1 (MQ=255)                                                                                                 aaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGAttgaattgaa                                                <  2:767838‑M2/97‑1 (MQ=255)                                                                                                  aatgatattattaattccactgcctttggtagaggaaagtgctaaATGATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTATAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGaaa                                               <  2:92043‑M2/98‑1 (MQ=255)                                                                                                  aatgatattattaataccactgcctttggtagaggaaagtgctaaATAATACAAAAATGTTTAGTTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGaaa                                               <  2:787283‑M2/98‑1 (MQ=255)                                                                                                     gatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAt                                            <  1:89642‑M2/101‑1 (MQ=255)                                                                                                           attaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtttgt                                      >  1:241539‑M2/37‑143 (MQ=255)                                                                                                              aattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTCAATTATTG‑TGCATTTCACTACTCGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGACTTGAAAGATGTTCGTtac                                   >  2:309572‑M2/34‑142 (MQ=255)                                                                                                                    actgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATg                             <  2:52133‑M2/116‑1 (MQ=255)                                                                                                                      tgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGa                           <  1:355982‑M2/118‑1 (MQ=255)                                                                                                                                  aggaaagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAg               <  1:217090‑M2/130‑1 (MQ=255)                                                                                                                                      aagtgctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTc           <  2:118673‑M2/134‑1 (MQ=255)                                                                                                                                           ctaaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGACTTGAAAGATGTTTGTTAAGGCATGGCGGCAAGCTAAAGATTCTCATa      >  1:282647‑M2/5‑143 (MQ=255)                                                                                                                                            taaATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGAGATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTgatcc     >  1:351926‑M2/4‑141 (MQ=255)                                                                                                                                               ataataatCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGt  <  1:581336/143‑1 (MQ=255)                                                                                                                                               ataataatCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGt  <  1:15697/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                GATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTG‑TGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGT  >  NC_000913/1300556‑1300840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.