New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3776001 =	35 (1.470)	3 (0.140)	3/246	NT	8.7%	coding (430/588 nt)	mtlR	transcriptional repressor MtlR
	?	NC_000913	3776026 =	30 (1.360)					coding (455/588 nt)	mtlR	transcriptional repressor MtlR

TACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGC  >  NC_000913/3775860‑3776135                                                                                                                                              |                                                                                                                                       tcgttgcttactcttgaaaggctttttttaagctgtttttggaagtcatctcggtcagtgaaaggaccattgttgatctcacagcctgttgatagcgctgaatttgcattgcatacaaactggagtctgctggttcaaactgt                                                                                                                                       >  2:406543‑M1/142‑143 (MQ=255)    gggTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAACCACGACGGCCACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTCAACTGCACTGCGTggc                                                                                                                                    >  2:302336/1‑143 (MQ=255)    gggTTGGGCGTCATGAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACTGCAACGTGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTggc                                                                                                                                    <  1:14129/143‑1 (MQ=255)         gggCGGCATGAAGGGCCAGGAATACGAAGATGCGGAGCTGCCGATCGCATTGCGTGAAGAGCCAAATCACGACGGCAACGAGTACGCCTTTACCGACGACCAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGt                                                                                                                               <  2:33277/143‑1 (MQ=255)              tCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGCAATCCTTCGACCCTTTCGTCAACTGCACCGCGTCGCCCCGTCacca                                                                                                                          >  2:184960/1‑143 (MQ=255)                    aCCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGTAGTAATTAGACCCTTTGTTGAACTGCACTTCGTGGCGGCGTTACCAccgccg                                                                                                                    >  1:87522/1‑143 (MQ=255)                     gctttttttaagctgattttggaaatcagctcagtgagtgaaaggaccattgttgctcgcgcagcctgttgatagcgctgaatttgcgttgcatacaaactggagtctgctggttcaaactGTGGCGGCGTTACCACcgccgc                                                                                                                   >  2:472599‑M1/122‑143 (MQ=255)                     ccGCCCGGAATACGGAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCGAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAGTCCGTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACcgccgc                                                                                                                   <  2:215730/143‑1 (MQ=255)                     ccGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACcgccgc                                                                                                                   <  1:109823/143‑1 (MQ=255)                            gAATACGATGATGTTGAACTGGTGATGGCAGCGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGtt                                                                                                            <  1:113130/143‑1 (MQ=255)                                  gAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACAACCACAGCCACAGATTGAAcc                                                                                                      >  1:228584/1‑143 (MQ=255)                                    aGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCGACGAGTACGCCTTTACCGAGGATGGAATCCTTGGGCCCTTTGGTGGACTGCACTGCGTGGCTGCGTTACCACCGCCGCCAGAGTTGGCACcag                                                                                                    >  1:429854/1‑143 (MQ=255)                                      aTGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGCCGACGCAATCCTTGGACACTTTGGTGAACTGCACCGCGGGGAGGCGTTACCACCGCAGCCACGGTTAGAACcagag                                                                                                  >  2:342918/1‑141 (MQ=255)                                        ttcgtgctgctgATTGCATTGCGTGAAGAGCTTAATCTCGTCGGCAACGAGTATGCCTTCACCGACGACGAAATCCTTGCACCCTTGGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGa                                                                                                <  2:24423/137‑1 (MQ=255)                                            aaCTGCTGATGGCATTGCCTGCCGAGCACTCTTCCACCGGCAACGAGTTCGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTcc                                                                                            <  2:4435/143‑1 (MQ=255)                                             aCTTCTTATTGCATTGCATGAAGAGCTAAGTCTCGACGGCATGGAGTACGCCCTTACCGACGACGAAATCCTTGGACCCTTTGGTGACCTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCa                                                                                           <  1:265051/143‑1 (MQ=255)                                               tgctgATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTAGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCACCGCCACCGTTTGAACCAGCCGCCTCAAGt                                                                                         >  2:110052/1‑143 (MQ=255)                                                      ggCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTTGTGAACTGCACTGCGTGTCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTatg                                                                                  <  1:284236/143‑1 (MQ=255)                                                             cGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTatgcaatgca                                                                           <  1:170927/143‑1 (MQ=255)                                                                      cTAAATAACGACGGCAACGAGTACGCCTTTACCGACGACGAAATACTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATACAgag                                                                  >  2:359979/1‑141 (MQ=255)                                                                        aaaTCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACGCTTTGGTGAACTGCACTGCGGGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACGCCAGTTTGCATCCAATGCAACTTCAgaggt                                                                >  2:287708/1‑139 (MQ=255)                                                                        aaaTCACGACGGCAACGAGTACGCCTTTACCGACGAAGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGAGGCGACGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTACAGTATGTAGGCAATGCAACTTGCGCGCt                                                                >  2:253321/1‑143 (MQ=255)                                                                           tCACGCGGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATc                                                             <  2:77442/143‑1 (MQ=255)                                                                            cACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTGGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTGACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCa                                                            <  1:165844/143‑1 (MQ=255)                                                                                   gCAACGAGTACGCCTTTACCGACGAAGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCAACGCCGCCACAGTATGAACCAGCAGACTGCAGAATGTAAGGAAAGCAACTTCAGCGACATCaaaaagca                                                     >  2:72571/1‑137 (MQ=255)                                                                                         aGTACGCCTTTGCCGGCGACGAAATCCTCGCACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGa                                               <  2:332767/143‑1 (MQ=255)                                                                                                cattACCGACGACGAAATCCTTGGACCCTTTGGTGAACGGCACTGCGTGGCGGCGTTACCACCGCCGCTACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATcaacaa                                        <  1:65617/141‑1 (MQ=255)                                                                                                cTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGCCTCCAGTTTGTATGCAATGCAAATTCAGCGCTCTCAACCGGCTGTGCGATcaacaa                                        >  1:82350/1‑143 (MQ=255)                                                                                                cTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATcaacaa                                        >  1:408547/1‑143 (MQ=255)                                                                                                      cgacgacgaAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTGGGACCAGCAGACGCCAGTTTGTATGCAATGCAAAGTCAGCGCTATCAACAGGCTGCAGGATCAACGATGCTcc                                  >  2:57119/1‑143 (MQ=255)                                                                                                          gcattgcatacaaactggagtctgctggttcaaactGTGGCGGCGTTACCAccgccg                                                                                                                    <  1:25705‑M1/21‑1 (MQ=255)                                                                                                          gcattgcatacaaactggagtctgctggttcaaactGTGGCGGCGTTACCAccgccg                                                                                                                    >  2:25705‑M1/37‑57 (MQ=255)                                                                                                            cgaAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACAAGAAGACTCCAGTTTGTATGCAATGCAAAATCAGCGCTATCAACAGGCTGTCCGATCAAACATGGTCGGTTCac                            >  1:27169/1‑143 (MQ=255)                                                                                                             gaAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCact                           <  1:459659/143‑1 (MQ=255)                                                                                                                aTCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCcctgac                        >  1:50015/1‑143 (MQ=255)                                                                                                                       gACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTg                 <  1:193854/143‑1 (MQ=255)                                                                                                                             ttGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGTCTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTcc           <  1:302336/143‑1 (MQ=255)                                                                                                                                   aaCTGCACGGCGTGGCGGCGTTACCACCGCCGCCAGAGTTTGAACCAGCAGACGCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATc     <  1:265607/143‑1 (MQ=255)                                                                                                                                    actgcactgcGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCa    >  1:277605/1‑143 (MQ=255)                                                                                                                                     ctgcactgcGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAAGGCAAATTCAGCGCTATCAACAGGCTCTGCGATCAACACTGGTCGTTTCACTGACTGACCTGCTTTCCAAAATCAg   >  2:85708/1‑143 (MQ=255)                                                                                                                                      tgcactgcGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCCCTGACTGAGCTGACTTCCAAAATCAGc  >  2:184081/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                       TACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATGCAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGC  >  NC_000913/3775860‑3776135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.