New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3776001 =	35 (1.470)	3 (0.140)	3/246	NT	8.7%	coding (430/588 nt)	mtlR	transcriptional repressor MtlR
	?	NC_000913	3776026 =	30 (1.360)					coding (455/588 nt)	mtlR	transcriptional repressor MtlR

GAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCAAAAGTAAGCAACGT  >  NC_000913/3775887‑3776166                                                                                                                                            |                                                                                                                                              gAATACGATGATGTTGAACTGGTGATGGCAGCGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGtt                                                                                                                                            <  1:113130/143‑1 (MQ=255)       gAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACAACCACAGCCACAGATTGAAcc                                                                                                                                      >  1:228584/1‑143 (MQ=255)         aGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCGACGAGTACGCCTTTACCGAGGATGGAATCCTTGGGCCCTTTGGTGGACTGCACTGCGTGGCTGCGTTACCACCGCCGCCAGAGTTGGCACcag                                                                                                                                    >  1:429854/1‑143 (MQ=255)           aTGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGCCGACGCAATCCTTGGACACTTTGGTGAACTGCACCGCGGGGAGGCGTTACCACCGCAGCCACGGTTAGAACcagag                                                                                                                                  >  2:342918/1‑141 (MQ=255)             ttcgtgctgctgATTGCATTGCGTGAAGAGCTTAATCTCGTCGGCAACGAGTATGCCTTCACCGACGACGAAATCCTTGCACCCTTGGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGa                                                                                                                                <  2:24423/137‑1 (MQ=255)                 aaCTGCTGATGGCATTGCCTGCCGAGCACTCTTCCACCGGCAACGAGTTCGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTcc                                                                                                                            <  2:4435/143‑1 (MQ=255)                  aCTTCTTATTGCATTGCATGAAGAGCTAAGTCTCGACGGCATGGAGTACGCCCTTACCGACGACGAAATCCTTGGACCCTTTGGTGACCTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCa                                                                                                                           <  1:265051/143‑1 (MQ=255)                    tgctgATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTAGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCACCGCCACCGTTTGAACCAGCCGCCTCAAGt                                                                                                                         >  2:110052/1‑143 (MQ=255)                           ggCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTTGTGAACTGCACTGCGTGTCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTatg                                                                                                                  <  1:284236/143‑1 (MQ=255)                                  cGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTatgcaatg‑ca                                                                                                          <  1:170927/143‑1 (MQ=255)                                           cTAAATAACGACGGCAACGAGTACGCCTTTACCGACGACGAAATACTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATACAgag                                                                                                 >  2:359979/1‑141 (MQ=255)                                             aaaTCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACGCTTTGGTGAACTGCACTGCGGGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACGCCAGTTTGCATCCAATG‑CAACTTCAgaggt                                                                                               >  2:287708/1‑139 (MQ=255)                                             aaaTCACGACGGCAACGAGTACGCCTTTACCGACGAAGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGAGGCGACGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTACAGTATGTAGGCAATG‑CAACTTGCGCGCt                                                                                               >  2:253321/1‑143 (MQ=255)                                                tCACGCGGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATc                                                                                            <  2:77442/143‑1 (MQ=255)                                                 cACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTGGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTGACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCa                                                                                           <  1:165844/143‑1 (MQ=255)                                                        gCAACGAGTACGCCTTTACCGACGAAGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCAACGCCGCCACAGTATGAACCAGCAGACTGCAGAATGTAAGGAAAG‑CAACTTCAGCGACATCaaaaagca                                                                                    >  2:72571/1‑137 (MQ=255)                                                              aGTACGCCTTTGCCGGCGACGAAATCCTCGCACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGa                                                                              <  2:332767/143‑1 (MQ=255)                                                                     cattACCGACGACGAAATCCTTGGACCCTTTGGTGAACGGCACTGCGTGGCGGCGTTACCACCGCCGCTACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATcaacaa                                                                       <  1:65617/141‑1 (MQ=255)                                                                     cTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGCCTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTCTCAACCGGCTGTGCGATcaacaa                                                                       >  1:82350/1‑143 (MQ=255)                                                                     cTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATcaacaa                                                                       >  1:408547/1‑143 (MQ=255)                                                                           cgacgacgaAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTGGGACCAGCAGACGCCAGTTTGTATGCAATG‑CAAAGTCAGCGCTATCAACAGGCTGCAGGATCAACGATGCTcc                                                                 >  2:57119/1‑143 (MQ=255)                                                                                 cgaAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACAAGAAGACTCCAGTTTGTATGCAATG‑CAAAATCAGCGCTATCAACAGGCTGTCCGATCAAACATGGTCGGTTCac                                                           >  1:27169/1‑143 (MQ=255)                                                                                  gaAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCact                                                          <  1:459659/143‑1 (MQ=255)                                                                                     aTCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCcctgac                                                       >  1:50015/1‑143 (MQ=255)                                                                                            gACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTg                                                <  1:193854/143‑1 (MQ=255)                                                                                                  ttGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGTCTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTcc                                          <  1:302336/143‑1 (MQ=255)                                                                                                        aaCTGCACGGCGTGGCGGCGTTACCACCGCCGCCAGAGTTTGAACCAGCAGACGCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATc                                    <  1:265607/143‑1 (MQ=255)                                                                                                         actgcactgcGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCa                                   >  1:277605/1‑143 (MQ=255)                                                                                                          ctgcactgcGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAAGG‑CAAATTCAGCGCTATCAACAGGCTCTGCGATCAACACTGGTCGTTTCACTGACTGACCTGCTTTCCAAAATCAg                                  >  2:85708/1‑143 (MQ=255)                                                                                                           tgcactgcGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCCCTGACTGAGCTGACTTCCAAAATCAGc                                 >  2:184081/1‑143 (MQ=255)                                                                                                                      gcggcggtggtaacgccgccacAGTTTGAACCAGCAGACTCCAGTTTGTATGCAACG‑CAAATTCAGCGCTATCAACAGGCTGCGCGAGCAACAATGGTCCTTTCACTCACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGc                      >  2:472599‑M2/23‑143 (MQ=255)                                                                                                                      GCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTACAAAAAGc                      <  1:390209‑M1/143‑1 (MQ=255)                                                                                                                      GCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTAACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGc                      <  2:75729‑M1/143‑1 (MQ=255)                                                                                                                       cggcggtggtaacgccgccacAGTTTGAACCAGCAGACTCCAGTTTGTatgcaatg‑c                                                                                                           >  2:25705‑M2/22‑57 (MQ=255)                                                                                                                       cggcggtggtaacgccgccacAGTTTGAACCAGCAGACTCCAGTTTGTatgcaatg‑c                                                                                                           <  1:25705‑M2/36‑1 (MQ=255)                                                                                                                          CGTAACCACGGCCGCCACAGTTTGACCGAGCCGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCACCAGGCTGTGCGATTAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCttt                  >  1:184960‑M1/1‑143 (MQ=255)                                                                                                                            ttACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCa                >  1:451896/1‑143 (MQ=255)                                                                                                                               ccaccGCCGCCCCGGTTCGACCCAACAGACGCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCaaaa             <  1:83648/143‑1 (MQ=255)                                                                                                                                 accGCCGACACAGTTTGAACCAGCAGACTCCAGTTTGGATGCAATGCCAAAATCA‑AACGTTCTACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCAAAAGt           <  1:342918/143‑1 (MQ=255)                                                                                                                                  ccgccgCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGGGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCAAAAGTa          >  2:380963/1‑143 (MQ=255)                                                                                                                                          acAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGAGATCAACAATGGTCCTTTCACTGACCGAGATGACTTCCAAAAACAGCTTAAAAAAAGCCTTTCAAGAGTAAGCAAcga  >  2:406543‑M2/3‑142 (MQ=255)                                                                                                                                            |                                                                                                                                              GAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGTTACCACCGCCGCCACAGTTTGAACCAGCAGACTCCAGTTTGTATGCAATG‑CAAATTCAGCGCTATCAACAGGCTGTGCGATCAACAATGGTCCTTTCACTGACTGAGCTGATTTCCAAAATCAGCTTAAAAAAAGCCTTTCAAAAGTAAGCAACGT  >  NC_000913/3775887‑3776166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.