| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3424418 = | NA (NA) | 5 (0.220) | 5/256 | NT | 100% | noncoding (2366/2904 nt) | rrlD | 23S ribosomal RNA |
| ? | NC_000913 | = 3946053 | 0 (0.000) | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA | |||||
CGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTT > NC_000913/3945911‑3946195 | cGTGATCGGGTTTGCGGACTGTGTGTGGTTGGTTGTTTGTCTTGTGCGGTCTCCTCCTAAAGAGTAACGGATGAGCACGAAGGTTGGTTAATCCTGGTCTGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGC > 2:181000‑M2/1‑143 (MQ=255) gTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGGAGGTTGGCTAATCCTGGTCGGACATCAGGCGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCg > 2:378986/1‑143 (MQ=17) tgtggcTTGGGGGTGGGTGGACGGGGGCGGTCTCCTCCTAAAGGGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCtcgcgccgtcacgctcgca > 2:117107‑M2/2‑124 (MQ=255) cTGGTGGGTAGTTTGACGGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCtcgcgccgtcacgctcgcagtcaa > 2:352452‑M2/1‑119 (MQ=255) ggggtTGTTTGCCTGGGGCGGTCTCCTCCTAAGGGGTCACGGATGAGCACGAAGGTTGGCTAATCCTGTTCGGGCATCAGGAGGTTAGTGCAATGGCATAAGCCAGTTTGACTGCtcgcgccgtcacgctcgcagtcaagctg > 2:395232‑M2/2‑115 (MQ=255) tGGCATAAGCCAGCTTGACTGCtcgcgccgtcacgctcgcagtcaagctggcttatgcca > 1:169411‑M2/1‑22 (MQ=255) tGGCATAAGCCAGCTTGACTGCtcgcgccgtcacgctcgcagtcaagctggcttatgcca < 2:169411‑M2/60‑39 (MQ=255) gttgctgctcgcgccgtcccgctcgctgtcatgctggcgtatggcattgcactaacctcctgatgtccgaccaggatgagccaaccttcgtgctcctccgttactctttaggaggagaccgccccagtcaaactacccaccag > 2:423471‑M2/5‑8 (MQ=255) cTGCtcgcgccgtcacgctcgcagtcaagctggcttatgccattgcactaacctcctgatgtccgaccaggcttagccaaccctcgtgctcctccgttaccctttacgaggagaccgccccggtcacactccccaccagacac < 1:30355‑M2/143‑140 (MQ=255) cTGCtcgcgccgtcacgctcgcagtcaagctggcttatgccattgcactaacctcctgatgtccgaccaggattagccaaccttcgtgctcctccgttactctttagcaggagaccgccccagtcaaactacccaccagacaa < 1:164252‑M2/143‑140 (MQ=255) cTGCtcgcgccgtcacgctcgcagtcaagctggcttatgccattgcacaaaactcctgctgtccgaccaggattacccaagcttcgtgctcctccgttactctttaggaggggaccgccccagtcaaactacccaccagacac < 1:470175‑M2/143‑140 (MQ=255) atgCtcgcgctgtcacgctcgcagtcaagctggcttatgccattgcactaacctcctgatgtccgaccaggattagccaaccttcgtgctcctccgttactctttaggaggagaccgccccagtcaaactacccaccagacac > 1:427317‑M2/2‑4 (MQ=255) ctcgcgccgtcacgctcgcagtcaagctggcttatgccattgcactaacctcctgatgtccgaccaggattagccaaccttcgtgctcctccgttactctttaggaggagaccgccccagtcaaactacccaccagacactgt > 2:417747‑M2/1‑1 (MQ=255) | CGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTT > NC_000913/3945911‑3946195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |