mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,194,852 | 0 | G | A | 45.8% | 4.1 / 18.3 | 25 | P34S (CCT→TCT) | rluE | 23S rRNA pseudouridine(2457) synthase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.6% | 160.9 / 53.8 | 121 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 6 (0.140) | 6/272 | 4.3 | 16.4% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 32 (0.730) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 6 (0.140) | 6/272 | 4.3 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 227052 | 36 (0.820) | 6 (0.140) | 6/272 | 4.3 | 14.8% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4171625 | 67 (1.520) | 6 (0.140) | 5/272 | 4.7 | 8.6% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4213004 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4040481 | NA (NA) | 6 (0.140) | 5/272 | 4.7 | 25.8% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040505 | 18 (0.410) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 3998038 = | 74 (1.680) | 5 (0.120) | 5/270 | 4.7 | 6.4% | coding (56/2163 nt) | uvrD | ssDNA translocase and dsDNA helicase ‑ DNA helicase II |
| ? | NC_000913 | 3998077 = | 76 (1.820) | coding (95/2163 nt) | uvrD | ssDNA translocase and dsDNA helicase ‑ DNA helicase II | |||||
| * | ? | NC_000913 | = 3946688 | 85 (1.930) | 6 (0.140) | 5/272 | 4.7 | 6.9% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040481 | NA (NA) | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228744 | 31 (0.710) | 6 (0.140) | 5/272 | 4.7 | 16.8% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040481 | NA (NA) | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 3783554 = | 70 (1.590) | 4 (0.100) | 4/272 | 5.2 | 5.3% | coding (108/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase |
| ? | NC_000913 | 3783583 = | 77 (1.830) | coding (79/1020 nt) | gpsA | glycerol‑3‑phosphate dehydrogenase | |||||
| * | ? | NC_000913 | 2728924 = | NA (NA) | 4 (0.090) | 4/276 | 5.3 | NA | noncoding (261/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2728949 = | NA (NA) | noncoding (236/2904 nt) | rrlG | 23S ribosomal RNA | |||||