Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009273 2,400,028 Δ9 bp coding (85‑93/939 nt) lrhA ← transcriptional repressor of flagellar, motility and chemotaxis genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 2400028 2400036 9 190 [0] [0] 194 lrhA transcriptional repressor of flagellar, motility and chemotaxis genes

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 24000270 (0.000)174 (1.140) 105/184 0.1 100% coding (94/939 nt) lrhA transcriptional repressor of flagellar, motility and chemotaxis genes
?CP009273 2400037 = 0 (0.000)coding (84/939 nt) lrhA transcriptional repressor of flagellar, motility and chemotaxis genes

Only 100 of 190 total aligned reads displayed.

TTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTA  >  CP009273/2399927‑2400126
                                                                                                    |                                                                                                   
ttgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGC                                                                                                     <  2:774214‑M1/101‑1 (MQ=255)
 tgttgCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCa                                                                                                    >  2:2812948‑M1/1‑100 (MQ=255)
     gCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaag                                                                                                <  1:1676288‑M1/101‑6 (MQ=255)
     gCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaag                                                                                                <  1:1735761‑M1/101‑6 (MQ=255)
       gACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtg                                                                                              >  2:920252‑M1/1‑94 (MQ=255)
       gACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtg                                                                                              >  2:2905726‑M1/1‑94 (MQ=255)
       cacCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtg                                                                                              >  1:729012‑M1/2‑94 (MQ=255)
        aCCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagagt                                                                                             >  1:3240184‑M1/1‑93 (MQ=255)
         ccGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgtt                                                                                            >  2:2717568‑M1/1‑92 (MQ=255)
         ccGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgtt                                                                                            <  1:3795677‑M1/101‑10 (MQ=255)
           gTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttca                                                                                          <  1:1320815‑M1/101‑12 (MQ=255)
           gTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttca                                                                                          <  1:51141‑M1/101‑12 (MQ=255)
            tGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCGGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcag                                                                                         >  1:3452744‑M1/1‑89 (MQ=255)
              aCGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagat                                                                                       <  2:1743385‑M1/101‑15 (MQ=255)
              aCGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagat                                                                                       <  2:685992‑M1/101‑15 (MQ=255)
              aCGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGGACGACACACAGCGGCAGCaaaagtgttcagat                                                                                       >  2:2113569‑M1/1‑87 (MQ=255)
               cGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatc                                                                                      <  1:223443‑M1/101‑16 (MQ=255)
               cGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatc                                                                                      <  1:2277455‑M1/101‑16 (MQ=255)
                gAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcg                                                                                     <  2:1724164‑M1/101‑17 (MQ=255)
                gAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcg                                                                                     >  2:2936708‑M1/1‑85 (MQ=255)
                gAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcg                                                                                     <  1:2529858‑M1/101‑17 (MQ=255)
                gAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcg                                                                                     >  1:254176‑M1/1‑85 (MQ=255)
                  gCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggc                                                                                   <  1:1606504‑M1/101‑19 (MQ=255)
                   cGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCcaaagtgttcagatcggca                                                                                  >  2:1889386‑M1/1‑82 (MQ=255)
                    gAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaa                                                                                 >  1:2190833‑M1/1‑81 (MQ=255)
                    gAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaa                                                                                 >  2:620549‑M1/1‑81 (MQ=255)
                      aCAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaaca                                                                               >  2:124071‑M1/1‑79 (MQ=255)
                         gTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagca                                                                            >  2:2512548‑M1/1‑76 (MQ=255)
                             tttCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaa                                                                        >  2:2835422‑M1/1‑72 (MQ=255)
                              ttCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagggttcagatcggcaacagcaacaaa                                                                       >  2:3012494‑M1/1‑71 (MQ=255)
                                cccAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatg                                                                     >  1:320141‑M1/1‑69 (MQ=255)
                                 ccAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgt                                                                    >  1:3752587‑M1/1‑68 (MQ=255)
                                 ccAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgt                                                                    <  1:1228580‑M1/101‑34 (MQ=255)
                                       aGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcag                                                              <  2:3574742‑M1/101‑40 (MQ=255)
                                        gttgttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagc                                                             <  2:1043430‑M1/101‑41 (MQ=255)
                                        gttgttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagc                                                             <  1:2910499‑M1/101‑41 (MQ=255)
                                           gttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcaga                                                          >  2:556485‑M1/1‑58 (MQ=255)
                                            ttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagat                                                         >  2:2827720‑M1/1‑57 (MQ=255)
                                            ttCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagat                                                         <  1:1507668‑M1/101‑45 (MQ=255)
                                             tCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatc                                                        <  2:1029161‑M1/101‑46 (MQ=255)
                                                aGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgag                                                     >  2:2248099‑M1/1‑53 (MQ=255)
                                                  aCGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggt                                                   >  1:3361457‑M1/1‑51 (MQ=255)
                                                   cGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtc                                                  <  1:2660572‑M1/101‑52 (MQ=255)
                                                   cGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtc                                                  <  1:1860627‑M1/101‑52 (MQ=255)
                                                    gCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcg                                                 >  2:3432275‑M1/1‑49 (MQ=255)
                                                     cTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcga                                                <  1:2927739‑M1/101‑54 (MQ=255)
                                                     cTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcga                                                >  2:1094102‑M1/1‑48 (MQ=255)
                                                      tGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgagggcgag                                               >  2:1154371‑M1/1‑47 (MQ=255)
                                                         aTTTGCTGACTTCCGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtt                                            <  2:1533884‑M1/101‑58 (MQ=255)
                                                         aTTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttttcagcagatcgaggtcgaggtt                                            >  2:2579694‑M1/1‑44 (MQ=255)
                                                         aTTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtt                                            <  2:1038649‑M1/101‑58 (MQ=255)
                                                         aTTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtt                                            <  1:417560‑M1/101‑58 (MQ=255)
                                                          tttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggtta                                           >  2:1225181‑M1/1‑43 (MQ=255)
                                                           ttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaa                                          <  1:1693519‑M1/101‑60 (MQ=255)
                                                           ttGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaa                                          <  1:3304453‑M1/101‑60 (MQ=255)
                                                            tGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaat                                         >  2:2635472‑M1/1‑41 (MQ=255)
                                                             gCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaatt                                        <  1:2240650‑M1/101‑62 (MQ=255)
                                                             gCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaatt                                        <  1:3881205‑M1/101‑62 (MQ=255)
                                                               tGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgtttagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattat                                      >  1:365599‑M1/1‑38 (MQ=255)
                                                               tGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattat                                      >  1:321783‑M1/1‑38 (MQ=255)
                                                               tGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattat                                      >  1:3322497‑M1/1‑38 (MQ=255)
                                                                gACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatc                                     <  1:1385165‑M1/101‑65 (MQ=255)
                                                                gACTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatc                                     <  1:2303058‑M1/101‑65 (MQ=255)
                                                                 aCTTACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgagggtaattatcg                                    >  2:1011692‑M1/1‑36 (MQ=255)
                                                                    tACGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggac                                 <  1:920252‑M1/101‑69 (MQ=255)
                                                                     aCGGCGGACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacg                                <  1:1644033‑M1/101‑70 (MQ=255)
                                                                      cggcggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacga                               <  2:3266055‑M1/101‑71 (MQ=255)
                                                                         cggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgattt                            <  2:3436680‑M1/101‑74 (MQ=255)
                                                                         cggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgattt                            <  1:646823‑M1/101‑74 (MQ=255)
                                                                         cggACTGAGTACGACACACAGCGGCAGCaaaagtgttaagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgattt                            <  2:2052731‑M1/101‑74 (MQ=255)
                                                                          ggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttg                           >  2:3594143‑M1/1‑27 (MQ=255)
                                                                          ggACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttg                           >  2:2915859‑M1/1‑27 (MQ=255)
                                                                           gACTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgc                          <  2:2332875‑M1/101‑76 (MQ=255)
                                                                            aCTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgca                         >  2:3174695‑M1/1‑25 (MQ=255)
                                                                            aCTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgca                         >  2:3161770‑M1/1‑25 (MQ=255)
                                                                             cTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcac                        >  1:2964641‑M1/1‑24 (MQ=255)
                                                                             cTGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcac                        <  2:731399‑M1/101‑78 (MQ=255)
                                                                              tGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcact                       >  2:3306877‑M1/1‑23 (MQ=255)
                                                                              tGAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcact                       <  2:1981370‑M1/101‑79 (MQ=255)
                                                                               gAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcactt                      <  1:2717568‑M1/101‑80 (MQ=255)
                                                                               gAGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcactt                      >  2:1574287‑M1/1‑22 (MQ=255)
                                                                                aGTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcactta                     >  1:3528791‑M1/1‑21 (MQ=255)
                                                                                 gTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttat                    <  1:2826408‑M1/101‑82 (MQ=255)
                                                                                 gTACGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttat                    >  1:2057273‑M1/1‑20 (MQ=255)
                                                                                    cGACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcat                 >  2:1920612‑M1/1‑17 (MQ=255)
                                                                                     gACACACAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcata                >  2:1817222‑M1/1‑16 (MQ=255)
                                                                                      acacacAGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatat               <  2:3814654‑M1/101‑87 (MQ=255)
                                                                                        acacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatat             >  1:1456112‑M1/1‑13 (MQ=255)
                                                                                         cacaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatatt            >  2:3697969‑M1/1‑12 (MQ=255)
                                                                                          acaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatatta           >  1:1438264‑M1/1‑11 (MQ=255)
                                                                                          acaGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatatta           >  1:11264‑M1/1‑11 (MQ=255)
                                                                                           caGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattat          <  2:1681008‑M1/101‑92 (MQ=255)
                                                                                            aGCGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatc         <  2:3635845‑M1/101‑93 (MQ=255)
                                                                                              cGGCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcac       <  2:2291670‑M1/101‑95 (MQ=255)
                                                                                               ggCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcact      <  2:2820921‑M1/101‑96 (MQ=255)
                                                                                               ggCAGCaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcact      >  2:1286551‑M1/1‑6 (MQ=255)
                                                                                                  agcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttac   >  1:3050589‑M1/1‑3 (MQ=255)
                                                                                                  agcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttac   >  1:3558113‑M1/1‑3 (MQ=255)
                                                                                                  agcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttac   >  1:1112762‑M1/1‑3 (MQ=255)
                                                                                                   gcaaaagtgttcagatcggcaacagcaacaaatgttctcagcagatcgaggtcgaggttaattatcggacgatttgcacttatcatatattatcacttact  >  1:660431‑M1/1‑2 (MQ=255)
                                                                                                    |                                                                                                   
TTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTA  >  CP009273/2399927‑2400126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑