New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4754032 (0.930)5 (0.160) 4/300 2.3 15.0% coding (295/531 nt) kefF potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent
?CP009273 = 47670 27 (0.850)coding (425/531 nt) kefF potassium‑efflux system ancillary protein for KefC, glutathione‑regulated; quinone oxidoreductase, FMN‑dependent
Rejected: Frequency below/above cutoff threshold.

TAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAGGACGCTGGAAGGCGTCGAAATTCGCTCTCTTTATCAACTCTATCCTGACTTCAATATCGATATTGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCGATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGGCAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/47256‑47540
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcatggcaaacGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTTCAAAATGGCTTTCCCCGCCGCCGGTCGTCACCGCCCACAGCAAATGTTTGC  <  CP009273/47670‑47535
                                                                                                                                                                                                                                                                                                                                                                                                                                                
ttatcagagaacgTCCGGATCCGCCTCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAGGTCGCTGTAAGGCGTCGAAATTCGCTCTCTTTATCAACTCTATCCTGACTTCAATATCGATATTGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCTATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGGTAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TG                                                                                                                                                    <  2:39869/262‑1
     tttccgctgCCGTATCCGCATCATTCCCATTCGAATAAACGGATGCTTGAACAGGCAAGGACGCTGGAAGTCGTCGAAATTCGCTCTCTTTATCAACTCTATCCTGACTTCAATATCGATATTGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCGATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGG                                                                                                                                               <  1:73016/266‑1
       TGCGCATCCGTATCCGCATCAGTTTCATGGAAATAAACGGATGCTTGAACAGGCAAGGACGCTGGAAGGCGTCGAAATTCGCTCTCTTTATCAACTCTATCCTGACTTCAATATCGATATTGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCGATCTGATCGTCTGGCAGCATCCGATGCAGTGNTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGGCA                                                                                                                                             >  1:485764/1‑275
                     cgaATCATTCCCATGCCAATAAACGGATGCTTGAACAGGCAAGGACGCTTGAAGTCGTCGAAATTTGCTCTCTTTATCAACTCTATCCTGACTTTAATTTCGAGATTGGCGCCGAGCAGGAGGCGCTGTCTCGCGCTGATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTGCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGGCA                                                                                                                                             <  1:380032/258‑1
                                                           GCAAGGACGCTGGAAGGCGTCGAAATTCGCTCTCTTTATCAACTCTATCCTGACTTCAATATCGATATTGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCGATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGCCTGCCCTTCGAGGGTTTCGTCGTCACAAATAAAGGTGCAGTGCATGGCAAACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGC                                                                                                    >  1:230537/1‑275
                                                                                                         ATCCTGACTTCAATATCGATATTGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCGATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGC                                                                                                                                                   <  1:79708/171‑1
                                                                                                                           ATATTGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCGATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCAT                                                                                                                                                 >  1:302854/1‑155
                                                                                                                               TGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCGATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGGCA                                                                                                                                             <  2:302850/155‑1
                                                                                                                                                                                          AGTGGTACAGCATTCCTCCGCTCCTAAAACTTTGCATCGATAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGGCAAACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTNCAAAATGGNTTTCCCCGCCGCCGGTCGTCAC                      >  1:468082/1‑215
                                                                                                                                                                                              GTACAGCAGTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTGTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑GGCATGGCAAACGGTGGCAGCCAGGTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTTCAAAATGGCTTTCCCCGCCGCCGGTCGTCACCGCC                  <  2:468075/215‑1
                                                                                                                                                                                                                                                 CGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGGCAAACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTTCAAAATGGCTTTCCCCGCCGCCGGTCGTCAC                      >  2:439123/1‑160
                                                                                                                                                                                                                                                     TGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGGCAAACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTTCAAAATGGCTTTCCCCGCCGCCGGTCGTCACCGCC                  <  1:439128/160‑1
                                                                                                                                                                                                                                                                                            TGCATGGCAAACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTTCAAAATGGCTTTCCCCGCCGCCGGTCGTCACCGCCCACAGCAAATGTTTGC  <  1:98737/148‑1
                                                                                                                                                                                                                                                                                            TGCATGGCAAACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTG                                                                                                           >  1:178884/1‑43
                                                                                                                                                                                                                                                                                                TGGCAAACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGT                                                                                                       <  2:178882/43‑1
                                                                                                                                                                                                                                                                                                 GGCAAACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTTC                                                    >  2:358520/1‑93
                                                                                                                                                                                                                                                                                                     AACGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTTCAAAA                                                <  1:358524/93‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                
TAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAGGACGCTGGAAGGCGTCGAAATTCGCTCTCTTTATCAACTCTATCCTGACTTCAATATCGATATTGCCGCCGAGCAGGAGGCGCTGTCTCGCGCCGATCTGATCGTCTGGCAGCATCCGATGCAGTGGTACAGCATTCCTCCGCTCCTCAAACTTTGGATCGATAAAGTTTTCTCCCACGGCTGGGCTT‑‑ACGGTCATGGCGGCAC‑‑‑‑‑‑‑GGCGC‑‑TGCATGGCAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/47256‑47540
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcatggcaaacGGTGGCAGCCAGTTCAGCCCGCAGTAGATTGCCGTCGCCTGTAGCGGCTGCGACAGCACATCAAAGCCCGGATGCGCACCAATTTCAAAATGGCTTTCCCCGCCGCCGGTCGTCACCGCCCACAGCAAATGTTTGC  <  CP009273/47670‑47535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.