| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | CP009273 | 248,669 | Δ14 bp | 100% | coding (178‑191/294 nt) | yafN → | antitoxin of the YafO‑YafN toxin‑antitoxin system |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 248669 | 248682 | 14 | 50 [0] | [0] 51 | yafN | antitoxin of the YafO‑YafN toxin‑antitoxin system |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 248668 | 0 (0.000) | 45 (1.160) | 34/276 | NT | 100% | coding (177/294 nt) | yafN | antitoxin of the YafO‑YafN toxin‑antitoxin system |
| ? | CP009273 | 248683 = | 0 (0.000) | coding (192/294 nt) | yafN | antitoxin of the YafO‑YafN toxin‑antitoxin system | |||||
CATTATTATGAGGGTATCACTGTATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAGTTACGTAAAAACCCAGCTAAATACTTTATTGATCAACCGGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTGCTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTCCTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACG > CP009273/248469‑248923 | tatattctggtgtgcattattatgagggtatcactgtatgcatcgaattctcgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGCTTAGAGGAAATTACAAGCCGCTCTCAACCATAtttt > 2:667487‑M2/215‑275 (MQ=255) attctggtgtgcattattatgagggtatcactgtatgcatcgaattctcgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAAt > 1:321339‑M2/212‑275 (MQ=255) tctggtgtgcattattatgagggtatcactgtatgcatcgaattctcgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaactggttgcggttcttgctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTACGTCCAAGTGCTGCAAGATTAGAGGAAATAACACGCCGCGCTGAACAATATCTTAATGa > 1:63074‑M2/210‑275 (MQ=255) ggtgtgcattattatgagggtatcactgtatgcatcgaattctcgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttccaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTCAACAATATCTTAATGatat < 1:667493‑M2/69‑1 (MQ=255) gtgtgcattattatgagggtatcactgtatgcatcgaattctcgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcataagtgccagagcattcgaagcgttaatggacacgcatgctgaagaagaggggaaaGCGCTTACGTCCAAGTGCGGCCAGATAAGAGGAAATTAAACGACTCGCTGAAAAATTTCTTAAAGctat > 2:41991‑M2/206‑274 (MQ=255) gaggttatcactgtatgcatcgaattctcgctgaaaaatcggtcaatatnactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCATGTGCTGAAAGATTAGAGGAAATTACAcg < 1:572245‑M2/42‑1 (MQ=255) atcactgtatgcatcgaattctcgctgagaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggaganaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTAAATGa > 1:618021‑M2/186‑275 (MQ=255) tatgcatcgaattctcgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGACATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAg > 1:132401‑M2/179‑275 (MQ=255) cgaattctcgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaagc > 1:276529‑M2/172‑173 (MQ=255) aattctcgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCcgcg < 1:309545‑M2/47‑1 (MQ=255) cgctgaaaaatcggtcaatatcactgagttacgtaaaaacccagctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCgg > 1:454547‑M2/164‑274 (MQ=255) caaaaacaagataanttctttattgatcaaccggttgccgttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTAc < 2:618015‑M2/146‑1 (MQ=255) agctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACAcgc > 2:187273‑M2/122‑164 (MQ=255) agctaaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGAc > 1:698483‑M2/122‑212 (MQ=255) aaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCcgcg < 1:187276‑M2/47‑1 (MQ=255) aaatactttattgatcaaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTa < 2:698477‑M2/95‑1 (MQ=255) caaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGa > 1:130901‑M2/103‑127 (MQ=255) caaccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTa > 1:126041‑M2/103‑140 (MQ=255) ccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGAt > 1:406644‑M2/100‑125 (MQ=255) ccggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAgg > 1:316252‑M2/100‑197 (MQ=255) cggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTag < 2:130900‑M2/29‑1 (MQ=255) cggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACAcg < 2:126040‑M2/42‑1 (MQ=255) ggttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCTCCTACAACTTACAACAGATGAACATGAAGCGTTAAAGGCGGata > 1:204092‑M2/98‑274 (MQ=255) ttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTaga < 2:406641‑M2/30‑1 (MQ=255) ttgcggttctttctaataatcgccccgcaggatatctcttaagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATa < 2:316249‑M2/102‑1 (MQ=255) aagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATTATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTAAAGCAGAGGAACTTGATGCGTTAACGGCGGCTTTTATTTCCTATAAGCgggacggtgttttgtccgttatttgtt > 2:808780‑M2/56‑262 (MQ=255) aagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGAt > 1:232890‑M2/56‑232 (MQ=255) aagtgccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTCCAATAAGGTGGACGGTGTTTTGCCAGATATAttt > 2:201369‑M2/56‑274 (MQ=255) gccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTa < 2:232887‑M2/181‑1 (MQ=255) gccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTCCTATAAGCGTGACGGTGTTTTGcc < 1:201372‑M2/209‑1 (MQ=255) ccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTaa > 2:227131‑M2/51‑113 (MQ=255) ccagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCggg > 1:410507‑M2/51‑162 (MQ=255) cagcgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAAc > 1:314988‑M2/50‑206 (MQ=255) cgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGat < 1:227134‑M2/67‑1 (MQ=255) cgcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTAtt < 2:410504‑M2/116‑1 (MQ=255) gcattcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGa < 2:314985‑M2/161‑1 (MQ=255) gcattagaagagttaatggacatgcttgctgaacgagaggagaaaGCGCTTTCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTCCTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATg < 2:204089‑M2/229‑1 (MQ=255) ttcgaagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAat > 1:796176‑M2/43‑98 (MQ=255) aagcgttaatggacatgcttgctgaacaagaggagaaagcgc < 1:710540‑M2/4‑1 (MQ=255) aagcgttaatggacatgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCt < 2:796170‑M2/60‑1 (MQ=255) gtttataganatgattgctgaccaagagtggaaaGAGCTTCCGTCCAAGTGCTTCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAGCTTGATGCGTTAACGGCGGATTTTATTTCCTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTacgacg < 2:321336‑M2/241‑1 (MQ=255) tgcttgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACAcgc > 1:106285‑M2/24‑66 (MQ=255) tgctgaacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCcgcg < 2:106285‑M2/47‑1 (MQ=255) aacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGAc > 1:204936‑M2/15‑105 (MQ=255) aacaagaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCg > 2:472712‑M2/15‑148 (MQ=255) agaggagaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTa < 2:204933‑M2/95‑1 (MQ=255) agaggagaaaGAGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTg < 1:472715‑M2/138‑1 (MQ=255) gaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTacac > 2:623228‑M2/5‑45 (MQ=255) gaaaGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACAcgc > 2:301538‑M2/5‑47 (MQ=255) gcgcTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCcgcg < 1:301541/47‑1 (MQ=255) gcgcTTCCGTCCAAGTACTGCAAGATTAGAGGAAATTACAcgccg < 1:623234/45‑1 (MQ=255) | CATTATTATGAGGGTATCACTGTATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAGTTACGTAAAAACCCAGCTAAATACTTTATTGATCAACCGGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTGCTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCTGAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAAGGATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTCCTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACG > CP009273/248469‑248923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |