New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	11 (0.470)	20 (0.860)	19/296	NT	54.1%	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	23 (0.990)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAAT  >  CP009273/359860‑360344                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                 cgccaccatccagtgcaggagctccgatgataagctgtcaaacatgagaattccgatccccaattcctggcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagggttcaccgacaaaaaacagataaaacgaaaggcccagtctttcgactaagcctttcggcttttttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTg                                                                                                                                                                                                                     <  1:65227‑M1/30‑1 (MQ=255) ccacaccacncagggccgggtctccgtggatacgcttgcaaacatgacaatgccgttccccaattcctgtcagtttatggcgggcgtcctgcccgccaccctccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCt                                                                                                                                                                                                                      >  2:65227‑M1/245‑273 (MQ=255)                                                                    aGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCAACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTACCCGCCACCCTCCGGGCCGTCGCTACGCAACACTCAAAACCGCACCCGGCGGAGTAGTCCTACCCAgg                                                                                                                                                 >  1:220209/1‑275 (MQ=39)                                                                                   gcgcTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGCTAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGTCGGGCGTCCTTCCCGCCCCCCCCCGGCCCGTCGCCTCGCAACGTTACAACCCCCCCCCGGCGCGTTTCTCCCACCCAGgattcgggagacgag                                                                                                                                   >  2:98614/1‑261 (MQ=255)                                                                                                      tccgggccgttgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATTGCGGGCTTCCTGCCCGTCACCCTCCGGGCCGTTGCTTCGCAAACTTCAAATCCGCTCCCGGCGGCTTTGTCCTCCTCAGGAGAGCGttcaccgacaaacaacacacaacacaca                                                                                                               <  1:266854‑M1/132‑12 (MQ=255)                                                                                                             cAGTTCAAGCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCTCCGCTTGCCAGCGGCTTACCATCCAGCGCCCCCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc                                                                                                         <  1:43771/274‑1 (MQ=255)                                                                                                                ttCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTTCTACTCAGGCGAGCTGTCACCGACCAAAACAAGATAAAAAAACAGACCCAg                                                                                                       >  1:223875/1‑273 (MQ=37)                                                                                                                tgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattaatt                                                                                                                                                                                                                                               <  1:67623‑M1/4‑1 (MQ=255)                                                                                                                tgcttcgcaacgttcaaatccgctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTTCCCGCCACCCTCCGTGCCCTTGCTTCGCAAAGTTCAAATCCGCACCCCGCGGATTTGTCCAACTCAGGAAACTGTTCAACGACCAACAACAACTAAANTCAAAGAcccaatc                                                                                                     <  2:376870‑M1/142‑4 (MQ=255)                                                                                                                    tcgcaacgttcaaatccgctcacggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTg                                                                                                                                                                                                                                           >  2:67623‑M1/130‑137 (MQ=255)                                                                                                                              tACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg                                                                                                                                                                                                                                 >  2:69579/1‑137 (MQ=255)                                                                                                                               acatgctctcccggcgtatttttcctactcaggcgggcgttcaccgaaaaagaacagataaaacgaaaggcccagtctttcgactgggcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACCAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCtt                                                                                      >  1:98615‑M1/119‑275 (MQ=255)                                                                                                                                  ttGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCATGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgg                                                                                                                                                                                                                             <  1:69579/137‑1 (MQ=255)                                                                                                                                                       cACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt                                                                                                                                                              >  2:182992/1‑179 (MQ=255)                                                                                                                                                         cTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCCCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGACTTGTCCTACTCCGGCGAGCGTTCACCGACAAACACCAGATAAAACGAAAGGCCCAGACTTTCGACTGCGCCTATCGTTTAATTTGATGCCTGgggactt                                                            >  2:436726/1‑275 (MQ=21)                                                                                                                                                           tCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc                                                                                                                                                          <  1:182999/179‑1 (MQ=255)                                                                                                                                                               gagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcggg                                                                                                                                                                                                                            <  1:411098‑M1/23‑1 (MQ=255)                                                                                                                                                                   gcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTc                                                                                                                                                                                                                        >  2:411083‑M1/83‑109 (MQ=255)                                                                                                                                                                    cgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGa                                                                                                                                                                <  2:11440‑M1/83‑1 (MQ=255)                                                                                                                                                                        caccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTg                                                                                                                                                            >  1:11440‑M1/78‑164 (MQ=255)                                                                                                                                                                                        cgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGGGTTCACCGACAAAAAACAGATAAAACGAAAGGCCCAGTCTTTCGACTAAGCCTTTCGGCTTTTTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcctg                              <  1:65227‑M2/274‑31 (MQ=255)                                                                                                                                                                                        ccacaccacncaGGGCCGGGTCTCCGTGGATACGCTTGCAAACATGACAATGCCGTTCCCCAATTCCTGTCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTaattcctggcagtttatggcgggcgtcct                               >  2:65227‑M2/4‑244 (MQ=255)                                                                                                                                                                                                aaagtcccagtctttcgactgagcctgtcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc                                                                                                                                                         <  1:341317‑M1/90‑1 (MQ=255)                                                                                                                                                                                                    tcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACt                                                                                                                                                     >  2:341305‑M1/50‑143 (MQ=255)                                                                                                                                                                                                       cagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATgg                                                                                                                                                                                                                                <  1:91948‑M1/19‑1 (MQ=255)                                                                                                                                                                                                           ctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATggcggg                                                                                                                                                                                                                            >  2:91947‑M1/43‑65 (MQ=255)                                                                                                                                                                                                            tttcgactggtcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCNTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACTAAAGGGCCTCGTGATACGCCTATTTTta           >  1:376882‑M1/42‑273 (MQ=255)                                                                                                                                                                                                                    gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTACTCAGGAGAGCGTTCAACGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAATGAGCCTTTCGTTTTATTTGATGCCTGTGGAAATGTGAATTAATTCTTGAAGACGAAAGGGCCTAGTGATACGCCTATTTTTATAGGTTAAt  <  1:67836‑M1/241‑1 (MQ=255)                                                                                                                                                                                                                    gagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGc                                                                                                                                            <  2:8371‑M1/103‑1 (MQ=255)                                                                                                                                                                                                                        ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTc                                                                                                                                        >  1:8371‑M1/30‑136 (MQ=255)                                                                                                                                                                                                                          ttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGccc                                                                                                                                                                                                                  <  2:143416‑M1/33‑1 (MQ=255)                                                                                                                                                                                                                            gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc                                                                                                                                                                   >  2:59545/1‑105 (MQ=255)                                                                                                                                                                                                                              ttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa                                                                                                                                                                                                              >  1:143418‑M1/24‑60 (MQ=255)                                                                                                                                                                                                                                aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt                                                                                                                                                               <  1:59545/105‑1 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                 CTGCCAGGCGCTGATGTGCCCGGCTTCTGACCATGCGGTCGCGTTCGGTTGCACTACGCGTACTGTGAGCCAGAGTTGCCCGGCGCTCTCCGGCTGCGGTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAAT  >  CP009273/359860‑360344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.