| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | CP009273 | 2,960,899 | Δ1,189 bp | 100% | [ptsP]–[rppH] | [ptsP], [rppH] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2960899 | 2962087 | 1189 | 40 [0] | [0] 39 | [ptsP]–[rppH] | [ptsP],[rppH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2960898 | 0 (0.000) | 35 (1.560) | 31/286 | NT | 100% | coding (896/2247 nt) | ptsP | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| ? | CP009273 | 2962088 = | 0 (0.000) | coding (249/531 nt) | rppH | RNA pyrophosphohydrolase | |||||
TTGGCGTATTTTCCTGCAGTGACATCACCACACTCGCGAACTCTTTCATTACCCTACGGTAGACATCACGTTTAAATGACACCACCTGTCTGACCGGATACCAGTAACTTACCCATCGCCAGCCGTCAAACTCTGGTGTACTGCTGGTTTGCATATTGATTTCTGCATCGCCGCTCACCAGCTGCAAGAGAAACCATTTTTGTTTTTGGCCGATACAAACCGGCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACG > CP009273/2961847‑2962298 | agcaccgaaggctgaatatccgcgcccatcacggtagggttccccagcgcacgtaccatgatcgcagcatgggagttggctgctccatctcgcacgacaacaccgactaagcgatcctgggacagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggccctcgattagcgtcatccagctgaaacatcaatagctgacccagcgcacCAAACGTTTCGTCAATTTGTAGCGCAAccagaac > 1:443471‑M2/242‑272 (MQ=255) aaggctgaatatccgcgcccatcacggtagggatccccagcgcacgtaccatgatcgcagcatgggagttggctgcgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcctctgccaccagaatgaaacgctccggccaggcgttcggcccttgattagcgtcatacagatgaaacagcaatcgctgacccagcgcacCAAACGATACGGTAAGCTGACGCGAAACCaagtacggctta > 2:41673‑M2/235‑270 (MQ=255) tgaatatccgcgcccatcacggtagggatccccagcgcacgtaccatgatcgcagcatgggagttggctgcgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccacccgaatgaaacgttccggccaggcgttcggcccttgataatcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAACCGGTTCGGTAAATGGTAACGCAACCAGNTACGCGTTTAAg > 2:387668‑M2/230‑273 (MQ=255) tatccgcgcccatcacggtagggatccccagcgcacgtaccatgatcgcagcatgggagttggctgcgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcnttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCaa < 1:419037‑M2/47‑1 (MQ=255) ccgcgcccatcacggtagggatccccagcgcacgtaccatgatcgcagcatgggagttggctgcgccatctcgcacgacaacaccgactacgcgatcctggggcagctcagcaagcgttgtcgctgacagtccatctgccaccagcatgaaacgttccggccaggcgttcggcccttgattagcttcatcaagattaaacagcaatcgctgacccctcgcacCAAACGTTTCGGTAAATTGTAGGGCAACCCCTtacccgtttaacccactcct > 2:435272‑M2/223‑265 (MQ=255) taccatgatcgcagcatgggagttggctgcgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcacgatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAATCAAGGATTCGAACGACCTTGCGGCTTAAcactacgtcagcaa > 2:122488‑M2/189‑269 (MQ=255) accatgatcgcagcatgggagttggctgcgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTAAGCGTTGAAGCAACAATTCGAACGTCTTTGCGGCTTAAACCtacttcttccag > 1:218518‑M2/188‑271 (MQ=255) ctgatgtcagcttgggagttggttgcgccatctcgcacgacaacaccgactaagcggtcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAAt < 1:122489‑M2/91‑1 (MQ=255) atgatcgcagcatgggagttggctgcgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTg > 1:73346‑M2/185‑225 (MQ=255) atcgctgcttggtagttttctccgccacctcgctcgataacaccgactaagcgatccttgggcagctcagcaagcgttgtcacgtacagttnatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagctcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGCTTCGAACGTCTTTGCCGCTTAATCCTAATTCTTCAAACAATTCa < 1:387682‑M2/94‑1 (MQ=255) tcgcagcatgggagttggctgcgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGc < 2:73346‑M2/45‑1 (MQ=255) gcagcatgggagttggctgcgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtaatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAACAAGGATTCGAAAGTCTATGCGGCTCAATACTACTTCTTCAAACAATTCACg > 1:225191‑M2/179‑274 (MQ=255) gcgccatctcgcacgacaacaccgactaagcgatcctgtggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCa < 2:243507‑M2/2‑1 (MQ=255) cgccatctcgcacgacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCCCTg > 1:93771‑M2/160‑272 (MQ=255) ccctctcccacaacaacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGa < 2:93770‑M2/117‑1 (MQ=255) caacaccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTActtctt > 1:136531‑M2/145‑227 (MQ=255) caccgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGt > 2:428309‑M2/142‑161 (MQ=255) accgactaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCaaa < 2:136529‑M2/87‑1 (MQ=255) gactaagctatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAgcg < 1:428324‑M2/24‑1 (MQ=255) actaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccagtcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATNTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCg > 1:424324‑M2/137‑272 (MQ=255) actaagcgatcctggggcagctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGTATTCGAACGTCTTTGCGGCTTAAt > 1:21520‑M2/137‑209 (MQ=255) ctggggcagctcagcacgcgttttcgctgacagttcatctgcccacagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAAtt < 2:141842‑M2/149‑1 (MQ=255) gctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAg > 1:141844‑M2/118‑274 (MQ=255) ctcagcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAgcg > 2:170779‑M2/117‑140 (MQ=255) cgcaagcgttgtctctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGa < 2:370172‑M2/117‑1 (MQ=255) gcaagcgttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAAc < 1:170784‑M2/28‑1 (MQ=255) gttgtcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTAc > 2:310324‑M2/107‑141 (MQ=255) tcgctgacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGt < 1:310335‑M2/39‑1 (MQ=255) gacagttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGc > 1:75709‑M2/98‑162 (MQ=255) gttcatctgccaccagaatgaaacgttccggccaggcgttcggcccttgattagcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCt < 2:75708‑M2/69‑1 (MQ=255) gcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTa > 2:228626‑M2/41‑74 (MQ=255) gcgtcatcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGc > 2:202906‑M2/41‑217 (MQ=255) catcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTAcgcg < 1:228635‑M2/38‑1 (MQ=255) catcaagatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCcac < 1:202914‑M2/181‑1 (MQ=255) agatgaaacagcaatcgctgacccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACg < 1:184559‑M2/211‑1 (MQ=255) acccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGa > 1:58354‑M2/12‑61 (MQ=255) cccagcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGcc > 1:153836‑M2/11‑183 (MQ=255) agcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCg < 2:58354‑M2/54‑1 (MQ=255) gcgcacCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGc < 2:153833‑M2/177‑1 (MQ=255) | TTGGCGTATTTTCCTGCAGTGACATCACCACACTCGCGAACTCTTTCATTACCCTACGGTAGACATCACGTTTAAATGACACCACCTGTCTGACCGGATACCAGTAACTTACCCATCGCCAGCCGTCAAACTCTGGTGTACTGCTGGTTTGCATATTGATTTCTGCATCGCCGCTCACCAGCTGCAAGAGAAACCATTTTTGTTTTTGGCCGATACAAACCGGCTTCGTGTCCCAACGCACCAAACGTTTCGGTAATTTGTAGCGCAACCAGTTACGCGTTGAAGCAAGGATTCGAACGTCTTTGCGGCTTAATCCTACTTCTTCAAACAATTCACGGTACATCGCCTGCTCTGCGGATTCTCCGGGGTTGATTCCGCCTTGCGGAAATTGCCAGGAGTGCTGACCAAATCGCCGGGCCCACATTACCTGCCCCTGGCGATTACAAATCACG > CP009273/2961847‑2962298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |