| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | CP009273 | 2,960,899 | Δ1,189 bp | 100% | [ptsP]–[rppH] | [ptsP], [rppH] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2960899 | 2962087 | 1189 | 40 [0] | [0] 39 | [ptsP]–[rppH] | [ptsP],[rppH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2960898 | 0 (0.000) | 35 (1.560) | 31/286 | NT | 100% | coding (896/2247 nt) | ptsP | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| ? | CP009273 | 2962088 = | 0 (0.000) | coding (249/531 nt) | rppH | RNA pyrophosphohydrolase | |||||
AGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACGTAAATCGCCAGCCCGCTCTTTGAGATAGTTATCACTTAGCGCGGCAAACTGTTCGGCAAATTTTTCAATGACCGTTTTTACCGCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATTCGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCG > CP009273/2960658‑2961109 | agcaCCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGTTCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCTCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGACAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTCGATTAGCGTCATCCAGCTGAAACATCAATAGCTGACCCAGCGCACcaaacgtttcgtcaatttgtagcgcaaccagaac > 1:443471‑M1/1‑241 (MQ=255) aaGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCCTCTGCCACCAGAATGAAACGCTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATACAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgatacggtaagctgacgcgaaaccaagtacggctta > 2:41673‑M1/1‑234 (MQ=255) tGAATATCCGCGCCCATCACGGTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCCGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATAATCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaccggttcggtaaatggtaacgcaaccagntacgcgtttaag > 2:387668‑M1/1‑229 (MQ=255) tatCCGCGCCCATCACGGTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCNTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaa < 1:419037‑M1/272‑48 (MQ=255) ccGCGCCCATCACGGTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTACGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTCCATCTGCCACCAGCATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCTTCATCAAGATTAAACAGCAATCGCTGACCCCTCGCACcaaacgtttcggtaaattgtagggcaaccccttacccgtttaacccactcct > 2:435272‑M1/1‑222 (MQ=255) tACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCACGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaatcaaggattcgaacgaccttgcggcttaacactacgtcagcaa > 2:122488‑M1/1‑188 (MQ=255) aCCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttaagcgttgaagcaacaattcgaacgtctttgcggcttaaacctacttcttccag > 1:218518‑M1/1‑187 (MQ=255) ctgatgtcagcttgggagtTGGTTGCGCCATCTCGCACGACAACACCGACTAAGCGGTCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaat < 1:122489‑M1/268‑92 (MQ=255) aTGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttg > 1:73346‑M1/1‑184 (MQ=255) aTCGCTGCTTGGTAGTTTTCTCCGCCACCTCGCTCGATAACACCGACTAAGCGATCCTTGGGCAGCTCAGCAAGCGTTGTCACGTACAGTTNATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCTCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggcttcgaacgtctttgccgcttaatcctaattcttcaaacaattca < 1:387682‑M1/275‑95 (MQ=255) tCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagc < 2:73346‑M1/225‑46 (MQ=255) gcagcaTGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTAATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaaacaaggattcgaaagtctatgcggctcaatactacttcttcaaacaattcacg > 1:225191‑M1/1‑178 (MQ=255) gcgcCATCTCGCACGACAACACCGACTAAGCGATCCTGTGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACca < 2:243507‑M1/162‑3 (MQ=255) cgcCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgccctg > 1:93771‑M1/1‑159 (MQ=255) ccctctcccaCAACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcgga < 2:93770‑M1/271‑118 (MQ=255) caacaCCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttctt > 1:136531‑M1/1‑144 (MQ=255) cacCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgt > 2:428309‑M1/1‑141 (MQ=255) acCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaa < 2:136529‑M1/227‑88 (MQ=255) gACTAAGCTATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcg < 1:428324‑M1/161‑25 (MQ=255) aCTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGTCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatntgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcggattctccggggttgattccg > 1:424324‑M1/1‑136 (MQ=255) aCTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaagtattcgaacgtctttgcggcttaat > 1:21520‑M1/1‑136 (MQ=255) tAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCAC > 2:413728‑M1/1‑134 (MQ=255) cTGGGGCAGCTCAGCACGCGTTTTCGCTGACAGTTCATCTGCCCACAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcggattctccggggttgattccgccttgcggaaatt < 2:141842‑M1/274‑150 (MQ=255) gCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcggattctccggggttgattccgccttgcggaaattgccaggag > 1:141844‑M1/1‑117 (MQ=255) cTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcg > 2:170779‑M1/1‑116 (MQ=255) cgcAAGCGTTGTCTCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcgga < 2:370172‑M1/229‑118 (MQ=255) gCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaac < 1:170784‑M1/140‑29 (MQ=255) gTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttac > 2:310324‑M1/1‑106 (MQ=255) tCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgt < 1:310335‑M1/141‑40 (MQ=255) gACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgc > 1:75709‑M1/1‑97 (MQ=255) gTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggct < 2:75708‑M1/162‑70 (MQ=255) gCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcggattctccggggttgattccgccttgcggaaattgccaggagtgctgaccaaatcgccgggc > 2:202906‑M1/1‑40 (MQ=255) gCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagtta > 2:228626‑M1/1‑40 (MQ=255) catcaAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcggattctccggggttgattccgccttgcggaaattgccaggagtgctgaccaaatcgccgggcccac < 1:202914‑M1/217‑182 (MQ=255) catcaAGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcg < 1:228635‑M1/74‑39 (MQ=255) aGATGAAACAGCAATCGCTGACCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcggattctccggggttgattccgccttgcggaaattgccaggagtgctgaccaaatcgccgggcccacattacctgcccctggcgattacaaatcacg < 1:184559‑M1/242‑212 (MQ=255) aCCCAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaagga > 1:58354‑M1/1‑11 (MQ=255) cccAGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcggattctccggggttgattccgccttgcggaaattgccaggagtgctgaccaaatcgcc > 1:153836‑M1/1‑10 (MQ=255) aGCGCACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcg < 2:58354‑M1/61‑55 (MQ=255) gcgcACcaaacgtttcggtaatttgtagcgcaaccagttacgcgttgaagcaaggattcgaacgtctttgcggcttaatcctacttcttcaaacaattcacggtacatcgcctgctctgcggattctccggggttgattccgccttgcggaaattgccaggagtgctgaccaaatcgccgggc < 2:153833‑M1/183‑178 (MQ=255) | AGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAGCGCACGTACCATGATCGCAGCATGGGAGTTGGCTGCGCCATCTCGCACGACAACACCGACTAAGCGATCCTGGGGCAGCTCAGCAAGCGTTGTCGCTGACAGTTCATCTGCCACCAGAATGAAACGTTCCGGCCAGGCGTTCGGCCCTTGATTAGCGTCATCAAGATGAAACAGCAATCGCTGACCCAGCGCACGTAAATCGCCAGCCCGCTCTTTGAGATAGTTATCACTTAGCGCGGCAAACTGTTCGGCAAATTTTTCAATGACCGTTTTTACCGCCCACTCTGCCACCGAGCCTTTATCAACCTCGGCAAACAATTCGCGACGCAGCCGGGTGTCCGAAAGCAGGTGCGAGTAAAGATCGAAAATAGCCGCCGTTTCTTTTTGTGCACCGGCGGCAAAGCG > CP009273/2960658‑2961109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |