New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1225 =	22 (1.270)	3 (0.180)	3/286	NT	12.3%	coding (889/2463 nt)	thrA	Bifunctional aspartokinase/homoserine dehydrogenase 1
	?	CP009273	1527 =	22 (1.350)					coding (1191/2463 nt)	thrA	Bifunctional aspartokinase/homoserine dehydrogenase 1

GCGACCCGCGTCAGGTGCCCGATGCGAGGTTGTTGAAGTCGATGTCCTACCAGGAAGCGATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACT  >  CP009273/1040‑1496                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                gCGACCCGCGTCAGGTGCCCGATGCGAGGTTGTTGAAGTCGATGTCCTACCAGGAAGCGATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCg                                                                                                                                                                                                                                                       >  1:248040/1‑212 (MQ=255)  cGACCCGCGTCAGGTGCCCGATGCGAGGTTGTTGAAGTCGATGTCCTACCAGGAAGCGATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAg                                                                                                                                                                                       >  1:137535/1‑275 (MQ=255)     cccGCGTCAGGTGCCCGATGCGAGGTTGTTGAAGTCGATGTCCTACCAGGAAGCGATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCa                                                                                                                                                                                                                                                   <  2:248032/212‑1 (MQ=255)         tgagtaacgcgcaggccagtggtcgcatcatcgttatttaccacgtcagagattgagcgttcagaagatccctgagcaatggcgacaatgttgatattggcgcgggccagtgcggcaaagaatttcgccgagatcccacgcaaggtgcgcataccatcacctaccaccgagataatgGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGt                                                                                                                                                                                >  1:73907‑M1/178‑275 (MQ=255)                        gCGAGGTTGTTGAAGTCGATGTCCTACCAGGAAGCGATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCANCGCCCAGTTCCAGATCCCTTGCCTGATAAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGTTGAAAGGGATGGTCGGCATGGCGgcgcg                                                                                                                                                                 <  1:259926/275‑1 (MQ=255)                                        cGATGTCCTACCAGGAAGCGATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGTTCCGGGGATGAAAGGGATGGTCAGCATGGCGTCTCGCGTCTTTGCAGCTATg                                                                                                                                                 >  1:96519/1‑275 (MQ=255)                                                          cGATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCa                                                                                                                                                                                                                                             >  1:129096/1‑165 (MQ=255)                                                            aTGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCg                                                                                                                              <  2:137532/274‑1 (MQ=255)                                                                                            tcACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACa                                                                                             <  1:52516/275‑1 (MQ=255)                                                                                               caggttgttattggcgcgggccagtgcggcaaagaatttcgccgagatcccacgcaaggtgcgcataccatcacctaccaccgagataatgGCCAGCCGTGATGAAGACGAATTACCGGNCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCGTGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACa                                                                                             >  1:284136‑M1/92‑272 (MQ=255)                                                                                                             cgcggcccagtgcggcaaagaatttcgccgagctcccacgcaaggttcgcataccagcaccttacaccgagatcatgGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGAAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCGTGGCGGCGCGCGTCTTTGCAGCGCTGTCACGCGCCCGTATTTCCGTGGTGCTGAATACGCACTCATCTACCGAATACCGCATcagtttccttttt                                                                            <  2:284125‑M1/198‑7 (MQ=255)                                                                                                                  aTCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGcc                                                                                                                                                                                                                                                                               >  1:10642/1‑75 (MQ=255)                                                                                                                      cccAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGcc                                                                                                                                                                                                                                                                           <  2:10642/75‑1 (MQ=255)                                                                                                                          gTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCAAGCCGGGATGAAGACGAATTACCGGTCAAGGGCATTTc                                                                                                                                                                                                                                         >  1:191358/1‑105 (MQ=255)                                                                                                                              cAGATCCCTTGCCTGATTAAAAATACCGGAAATCCACAAGCACCAGGTACGCTCATTGGTGCAAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAAt                                                                                                                                                                                                                                     <  2:191354/105‑1 (MQ=255)                                                                                                                                     cTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTc                                                                                                                                               >  1:183152/1‑184 (MQ=255)                                                                                                                                         ccTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCAcgc                                                                                                                                           <  2:183148/184‑1 (MQ=255)                                                                                                                                             aTTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGc                                            >  1:57545/1‑275 (MQ=255)                                                                                                                                                 aaaaTACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGa                                                                                                  <  1:77111/217‑1 (MQ=255)                                                                                                                                                                               cGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATc                                                                                                                                                                                                                                    >  2:42220/1‑57 (MQ=255)                                                                                                                                                                               cGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAg                                                                                                                                                                                                              >  2:253825/1‑79 (MQ=255)                                                                                                                                                                                   cATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTc                                                                                                                                                                                                                                         >  1:116556/1‑48 (MQ=255)                                                                                                                                                                                   cATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGaa                                                                                                                                                                                                                                <  1:42221/57‑1 (MQ=255)                                                                                                                                                                                   cATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGtt                                                                                                                                                                                                          <  1:253833/79‑1 (MQ=255)                                                                                                                                                                                   cATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAatcat                                                                                                         >  1:92642/1‑176 (MQ=255)                                                                                                                                                                                   cATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAatcat                                                                                                         <  2:92640/176‑1 (MQ=255)                                                                                                                                                                                       ggTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAAt                                                                                                                                                                                                                                     <  2:116554/48‑1 (MQ=255)                                                                                                                                                                                       ggTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACt  >  1:62132/1‑275 (MQ=255)                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                GCGACCCGCGTCAGGTGCCCGATGCGAGGTTGTTGAAGTCGATGTCCTACCAGGAAGCGATGGAGCTTTCCTACTTCGGCGCTAAAGTTCTTCACCCCCGCACCATTACCCCCATCGCCCAGTTCCAGATCCCTTGCCTGATTAAAAATACCGGAAATCCTCAAGCACCAGGTACGCTCATTGGTGCCAGCCGTGATGAAGACGAATTACCGGTCAAGGGCATTTCCAATCTGAATAACATGGCAATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACT  >  CP009273/1040‑1496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.