New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1225 =	22 (1.270)	3 (0.180)	3/286	NT	12.3%	coding (889/2463 nt)	thrA	Bifunctional aspartokinase/homoserine dehydrogenase 1
	?	CP009273	1527 =	22 (1.350)					coding (1191/2463 nt)	thrA	Bifunctional aspartokinase/homoserine dehydrogenase 1

AATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGTCGCCATTGCTCAGGGATCTTCTGAACGCTCAATCTCTGTCGTGGTAAATAACGATGATGCGACCACTGGCGTGCGCGTTACTCATCAGATGCTGTT  >  CP009273/1284‑1715                                                                                                                                                                                                                                                    |                                                                                                                                                                                             aaTGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCNTTGCAGCGNTGTCACGCGCCCATATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAACCGCTGGCAGTGACGGAACGGCTGGCCATTAtct                                                                                                                                                                                       <  1:221788/251‑1 (MQ=255)                       gggATGAAAGGGATGGTCGCCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGCCTGTGTGCGAGCTGAACGGGCAATGCAGGACGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAAAGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACATGGCGTGGGATACCGGCGa                                                                                                                                          >  1:268569/1‑274 (MQ=255)                                              aaaaaggaaactgatgcggtattcggtagatgagtgcgtattcagcaccacggaaatacgggcgcgtgacagcgctgcaaagacgcgcgccgccacgccgaccatccctttcatccccggaccagaaacgctgaacatttccatgttattcagattggaaatgcccttgaccggtaattcgtcttcatcacggctggcCATGATCTCGGTGTAAGGTGCTGGTATGCGAACCTTGCGTGGGAGCTCGGCGAAATTCTTTGCCGCACTGGGCcgcg                                                                                                                  <  2:284125‑M2/77‑1 (MQ=255)                                                 gggcggggtagttGCAGTGAGGGCGCGCGCCCGTGTTTCCGTGGTGCTGATTACGCCATCATCTTCCGAATTCAGCATCAGTTTCTGGGTTCCACAAAGCGACTGTGTGCGAGCGGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAGGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGcc                                                                                                                <  2:62130/263‑1 (MQ=255)                                                     cgcgTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACAGAAAGAAGGCTTACTGGAGACGCTGGCAGTGACGGAACGGCTGGCCATTAt                                                                                                                                                                                         >  1:92677/1‑197 (MQ=255)                                                               tgtattcggaagatgattgcgtaatcagcaccacggaaatacgggcgcgtgacatcgctgcaaagacgcgcgccgccacgccgaccatccctttcatccccggaccagaaacgctgaacattgccatgttattcagattggaaatgcccttgnccggtaattcgtcttcatcacggctggcCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCaataacaacctg                                                                                                    >  1:284136‑M2/182‑269 (MQ=255)                                                                                                       gCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGGGTAGGTATGAGCACCTGGCGTGGGATCTCGGCGAAATTCTTTGCCGAACTGGCACGCGCCAATATCAACATTGAGGCAATTGCGCAGGGATCGTCGGAACgagncaccgcgg                                                            >  2:33071/1‑261 (MQ=255)                                                                                                                         cAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATgcg                                                                                                                                                                 >  2:173994/1‑153 (MQ=255)                                                                                                                             aTCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCAcc                                                                                                                                                             <  1:173998/153‑1 (MQ=255)                                                                                                                               cAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTAtc                                                                                                                                                                                        >  2:145134/1‑124 (MQ=255)                                                                                                                               cAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCACATATCAACATTGTCGCCATTGCTCAGGGATCTTCTGAACGCGCAATCTCTATCGTGGTAAATAACGATGATGCTACCa                                 >  1:320637/1‑275 (MQ=255)                                                                                                                                   ttCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCgg                                                                                                                                                                                    <  1:145137/124‑1 (MQ=255)                                                                                                                                      tGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCcg                                                                                                                    >  2:190262/1‑185 (MQ=255)                                                                                                                                          ttCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGcc                                                                                                                <  1:190266/185‑1 (MQ=255)                                                                                                                                                  accatccctttcatccccggaccagaaacgctgaacattgccatgttattcagattggaaatgcccttgaccggtaattcgtcttcatcacggctggcCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGTCGCCATTGCTCAGGGATCTTCTGAACGCTCAATCTCTGACGTGGTAAATAACGATGATGCGACCACTGGCCTGCGCGTTACtca              >  1:73907‑M2/99‑275 (MQ=255)                                                                                                                                                            tgCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACa                                                                                                      >  1:281075/1‑177 (MQ=255)                                                                                                                                                              cGAGATGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGTCGCCATTGCTCAGGGATCTTCTGAACGCTCAATCTCTGTCGTGGTAAATAACGATGATGCGACCACTGGCGTGCGCGTTACTCATCAGATGCTGtt  <  1:211010/275‑1 (MQ=255)                                                                                                                                                                aGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGt                                                                                                  <  2:281064/177‑1 (MQ=255)                                                                                                                                                                    gAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGTCGCCATTGCTCAGGGAtct                                                                               >  1:33228/1‑192 (MQ=255)                                                                                                                                                                      aCGGGCAATGCAGGAAGAGTTCTACCCGGAACTGTAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGACGCCATTGCTCANGGATCTTCNGAACGCTCAATCTCTGTCGTGGTAAATAACGATGATGCGACCACTGGCGTGCGCGTTACTCATCAGAt        >  1:221750/1‑261 (MQ=255)                                                                                                                                                                        gggCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGTCGCCATTGCTCAGGGATCTTCTg                                                                           <  2:33228/192‑1 (MQ=255)                                                                                                                                                                                                                             cTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGcc                                                                                                                               >  2:216935/1‑87 (MQ=255)                                                                                                                                                                                                                             cTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGTCGCCATTGCTCAGGGATCTTCTg                                                                           >  1:182115/1‑139 (MQ=255)                                                                                                                                                                                                                                 cAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCAc                                                                                                                           <  1:216941/87‑1 (MQ=255)                                                                                                                                                                                                                                 cAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGTCGCCATTGCTCAGGGATCTTCTGAACg                                                                       <  2:182111/139‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                             AATGTTCAGCGTTTCTGGTCCGGGGATGAAAGGGATGGTCGGCATGGCGGCGCGCGTCTTTGCAGCGATGTCACGCGCCCGTATTTCCGTGGTGCTGATTACGCAATCATCTTCCGAATACAGCATCAGTTTCTGCGTTCCACAAAGCGACTGTGTGCGAGCTGAACGGGCAATGCAGGAAGAGTTCTACCTGGAACTGAAAGAAGGCTTACTGGAGCCGCTGGCAGTGACGGAACGGCTGGCCATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTTTGCCGCACTGGCCCGCGCCAATATCAACATTGTCGCCATTGCTCAGGGATCTTCTGAACGCTCAATCTCTGTCGTGGTAAATAACGATGATGCGACCACTGGCGTGCGCGTTACTCATCAGATGCTGTT  >  CP009273/1284‑1715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.