New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	48485 =	12 (0.690)	3 (0.190)	3/284	NT	21.3%	coding (717/1863 nt)	kefC	potassium:proton antiporter
	?	CP009273	49185 =	11 (0.680)					coding (1417/1863 nt)	kefC	potassium:proton antiporter

CGGTGCTGCTGTTCCAGGATATCGCGGCGATCCCGCTGGTGGCGATGATTCCGCTACTGGCAACGAGCAGTGCCTCGACGACGATGGGCGCATTTGCTCTCTCGGCGTTAAAAGTGGCGGGTGCGCTGGTGCTGGTGGTATTGCTGGGGCGCTATGTCACGCGTCCGGCGCTGCGTTTTGTAGCCCGCTCTGGCTTGCGGGAAGTGTTTAGTGCCGTGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGAACCATTTAAAGGTTTGCTGTTGGGGCTGTTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGCTGCTCGGTTTCCTCATCATCAAAATCGCCATGCTGTGGCTGATTGCCCGACCGTTGCAAGTGCCAAATAAAC  >  CP009273/48217‑48738                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                              caaccattgcgatctcttccaccatctgaatattaaagcggcggaacacatcggcacgttctcgcgcttcatacggccccagacctaaactttccagtgccagacgcccggttttcagcgcaccttcgaaggtttcacgctccggcttttcaacgcctgcctgacgcaaacgaatgtagtggtcgacatcgcgggagcgggcaataatctgcaaatgcgggaaatgttctttcaccatctctgtcagttgcaggttggtttgcggttcGTcgatg                                                                                                                                                                                                                                                         <  1:329706‑M1/7‑1 (MQ=255)                              aTCCCGCTGGTGGCGATGATTCCGCTACTGGCAACGAGCAGTGCCTCGACGACGATGGGCGCATTTGCTCTCTCGGCGTTAAAAGTGGCGGGTGCGCTGGTGCTGGTGGTATTGCTGGGGCGCTATGTCACGCGTCCGGCGCTGCGGTTTGTAGCCCGCTCTGGCTTGCGGGAAGTGTTTAGTGCCGTGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTTGATGGCGATGGGCGCGGTTCTGGCGGGCGTAct                                                                                                                                                                                                                            >  1:207681/1‑275 (MQ=255)                                                             caccGAGCGGTGCCTCGACGACGATGGGCGCATTTGTTCTCTCGGCGTTAAAAGTGGCGGGTGCGCTGGTGCTGGTGGTATGGCTGGGGCGCTATGTCACGCGTCCGGCGCTGCGTTTTGTAGCCCGCTCTGGCTTGCGGGAAGTGTTTAGTGCCGTGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTg                                                                                                                                                                                             <  1:118875/272‑1 (MQ=255)                                                                            gacccagacctgaactgtccagtgccagccgcccggtgttcagcgcaccttcgaaggtttcacgctccggcttttcaacgcctgcctgacgcaaacgaaggtagtggtcgacatcgcgggcgcgggcaataatctgcaaatgcgggaaatgttctttcaccatctctgtcagttgcaggttggtttgcggatcGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGaa                                                                                                                                                                              >  2:329694‑M1/194‑275 (MQ=255)                                                                                        aactttccagtgccagacgcccggttttcagcgcaccttcgaaggtttcacgctccggcttttcaacgcctgcctgacgcaaacgaatgtagtggtcgacatcgcgggcgcgggcaataatctgcaaatgcgggaaatgttctttcaccatctctgtcagttgcaggttggtttgcggatcg                                                                                                                                                                                                                                                               <  2:38055‑M1/1‑1 (MQ=255)                                                                                            ttccagtgccagacgcccggttttcagcgcaccttcgaaggtttcacgctccggcttttcaacgcctgcctgacgcaaacgaatgtagtggtcgacatcgcgggcgcgggcaataatctgcaaatgcgggaaatgttctttcaccatctctgtcagttgcaggttggtttgcggatcGTcga                                                                                                                                                                                                                                                           >  1:38055‑M1/178‑182 (MQ=255)                                                                                             tttGCTCTCTCGGCGTTAAAAGTGGCGGGTGCGCTGGTGCTGGTGGTATTGCTGGGGCGCTATGTCACGCGTCCGGCGCTGCGTTTTGTAGCCCGCTCTGGCTTGCGGGAAGTGTTTAGNGCCGTGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGAACCATTTAAAGGttt                                                                                                                                                                <  1:286247/272‑1 (MQ=255)                                                                                                                           gtgctggtgcttgtGGTTTGGCTTGGGCGTTTTGGCACGCGTCCGGCGCTGGTTTTTGTAGGCCGCTCTGGCTTGCGGGAAGTGTTTAGTGCCGTGGGGTTATTCCGCGTGTTTGGCTTTGGTTTGCTGCTGGAAGGGGTCGGCTTGTCGATGGCGATGGGCGCGTTGCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGAACCATTTAAAGGTTTGCTGTTGGGGCTGTTTTTCATCGGTGTTGGCa                                                                                                                                <  1:57724/272‑1 (MQ=255)                                                                                                                                      ttcacgctccggcttttcaacgcctgcctgacgcaaacgaatgtagtggtcgacatcgcgggcgcgggcaataatctgcaaatgcgggaaatgttctttcaccatctctgtcagttgcaggttggtttgcggatcg                                                                                                                                                                                                                                                               <  2:75618‑M1/1‑1 (MQ=255)                                                                                                                                      ttcacgctccggcttttcaacgcctgcctgacgcaaacgaatgtagtggtcgacatcgcgggcgcgggcaataatctgcaaatgcgggaaatgttctttcaccatctctgtcagttgcaggttggtttgcggatcGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCgg                                                                                                                                                                                                              <  2:229716‑M1/50‑1 (MQ=255)                                                                                                                                          cgctccggcttttcaacgcctgcctgacgcaaacgaatgtagtggtcgacatcgcgggcgcgggcaataatctgcaaatgcgggaaatgttctttcaccatctctgtcagttgcaggttggtttgcggatcGTcga                                                                                                                                                                                                                                                           >  1:75620‑M1/132‑136 (MQ=255)                                                                                                                                          cgctccggcttttcaacgcctgcctgacgcaaacgaatgtagtggtcgacatcgcgggcgcgggcaataatctgcaaatgcgggaaatgttctttcaccatctctgtcagttgcaggttggtttgcggatcGTCGATGGCGATGGGCGCGTTTCTGTCGGGCGTACTGCTGGCAAGCTCGGAATa                                                                                                                                                                                                          >  1:229723‑M1/132‑185 (MQ=255)                                                                                                                                                                                               tGGCTTGCGGGAAGTGTTTAGTGCCGTGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGAACCATTTAAAGGTTTGCTGTTGGGGCTGTTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGCTGCTCGGTTTCCtc                                                            >  1:26280/1‑274 (MQ=255)                                                                                                                                                                                                      cGGGAAGTGTATAGTGCCGTGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATgcgc                                                                                                                                                                                               >  1:328671/1‑136 (MQ=255)                                                                                                                                                                                                          aaGTGTTTAGTGCCGTGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGga                                                                                                                                                                                           <  2:328659/136‑1 (MQ=255)                                                                                                                                                                                                                         tGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTgg                                                                                                                                                                                            >  2:25407/1‑120 (MQ=255)                                                                                                                                                                                                                         tGGCGTTATTCCTCGTGTTTGGCAGTGGATTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGAACCATTTAAAGGTTTGCTGTTGGGGCTGTTTTTCATCGGTGTTGGCATGTNGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGCTGCTCGGTTTCCTCATCATCAAAATCGCCATGCTGTGGCTg                                 >  1:236628/1‑275 (MQ=255)                                                                                                                                                                                                                           gCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGAACCATTTAAAGGTTTGCTGTTGGGGCTGTTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCa                                                                                                              <  1:111745/196‑1 (MQ=255)                                                                                                                                                                                                                             gTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGagag                                                                                                                                                                                        <  1:25407/120‑1 (MQ=255)                                                                                                                                                                                                                                 tgttctttcaccatctctgtcagttgcaggttggtttgcggatcGTcgat                                                                                                                                                                                                                                                          <  2:35278‑M1/6‑1 (MQ=255)                                                                                                                                                                                                                                     ctttcaccatctctgtcagttgcaggttggtttgcggatcGTcgatggcg                                                                                                                                                                                                                                                      >  1:35278‑M1/41‑50 (MQ=255)                                                                                                                                                                                                                                                         ctgctgGAAGAGTTCGGCTTGTCGATGGCGATGTGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGAACCATTTAAAGGTTTGCTGTTGGGGCTGTTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGCTGCTCGGTTTCCTCATCATCAAAATCGCCATGCTGTGGCTGATTGCCCGACCGTTGCAAGTGCCAAATAAAc  <  1:70677/274‑1 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                              CGGTGCTGCTGTTCCAGGATATCGCGGCGATCCCGCTGGTGGCGATGATTCCGCTACTGGCAACGAGCAGTGCCTCGACGACGATGGGCGCATTTGCTCTCTCGGCGTTAAAAGTGGCGGGTGCGCTGGTGCTGGTGGTATTGCTGGGGCGCTATGTCACGCGTCCGGCGCTGCGTTTTGTAGCCCGCTCTGGCTTGCGGGAAGTGTTTAGTGCCGTGGCGTTATTCCTCGTGTTTGGCTTTGGTTTGCTGCTGGAAGAGGTCGGCTTGTCGATGGCGATGGGCGCGTTTCTGGCGGGCGTACTGCTGGCAAGCTCGGAATACCGTCATGCGCTGGAGAGCGATATCGAACCATTTAAAGGTTTGCTGTTGGGGCTGTTTTTCATCGGTGTTGGCATGTCGATAGACTTTGGCACGCTGCTTGAAAACCCATTGCGCATTGTCATTTTGCTGCTCGGTTTCCTCATCATCAAAATCGCCATGCTGTGGCTGATTGCCCGACCGTTGCAAGTGCCAAATAAAC  >  CP009273/48217‑48738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.