New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	48485 =	12 (0.690)	3 (0.190)	3/284	NT	21.3%	coding (717/1863 nt)	kefC	potassium:proton antiporter
	?	CP009273	49185 =	11 (0.680)					coding (1417/1863 nt)	kefC	potassium:proton antiporter

AGAACAGCCGCGCGTGATTATCGCCGGATTCGGTCGTTTTGGGCAGATTACCGGACGTTTACTGCTCTCCAGCGGGGTGAAAATGGTGGTACTCGATCACGATCCGGACCATATCGAAACCTTGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTGCGCTGAAAACCGGGCGTCTGGCACTGGAAAGTTTAGGTCTGGGGCCGTATGAAGCGCGAGAACGTGCCGATGTGTTCCGCCGCTTTAATATTCAGATGGTGGAAGAGATGGCAATGGTTG  >  CP009273/48959‑49452                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                            agaaCAGCCGCGCGTGATTATCGCCGGATTAGGTCGTTTTGGGCAGATTACCGGACGTTTACTGCTCTCAAGCGGGGTGAAAATGGTGGTACTCGAACACGATCCGGACCATATCGAAACCTTGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGAGGATGGATTTACTGGAATCTGCCGGAGCGGAGAAAGCGGAAGGGCAGATTAACGCCATCGAACGTACGCAACCCACCCAGAGACTAACAGGGAGGGNNAAAGAACAtgtac                                                                                                                                                                                                                             >  2:252221/1‑271 (MQ=255)                                                         gTTTACTGCTCTCCAGCGGGGTGAAAATTGTGGTACTCGATCACGATCCGGACCATATCGAAACCTTGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCANCCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTAGTTTGCgc                                                                                                                                                                     >  1:260526/1‑274 (MQ=255)                                                                   ctcCAGCGGGGTGAAAATGGTGGTACTCGATCACGATCCGGACCATATCGAAACCTTGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCAACCTACAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCACGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCg                                                                                                                                                           >  1:178571/1‑275 (MQ=255)                                                                                                    ggtaaagacagatagCGAAACCTTGCGTAAAGTTGGTATGAAAGTGTGTGATGGCGATGCCACGCGGATGGATTTACTGGAATCGGCCGGAGCGGCGAAAGCGGAAGGGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTGCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGt                                                                                                                           <  2:105786/263‑1 (MQ=255)                                                                                                                tatCGAAACCTTGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCAt                                                                                                                                                                                                                        >  1:25621/1‑169 (MQ=255)                                                                                                                    gAAACCTTGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGc                                                                                                                                                                                                                    <  2:25621/169‑1 (MQ=255)                                                                                                                          ttGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATc                                                                                                                                                                                                                                                                          <  1:166145/109‑1 (MQ=255)                                                                                                                          ttGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGa                                                                                                                               >  1:105788/1‑248 (MQ=255)                                                                                                                           tGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGAGGGTGAAAGAACATTTCACGCATTTGCAGATTATTGCCCGCGCCCGCGATGTACACAAATACATTCGTTTGAGTCAGGCAGGCGTTGAAAAGCCGGAGCGGGCAACCCTCGAATGGGCGCTGAAAAACCGGCGTCTGGcc                                                                                                   >  2:291185/1‑274 (MQ=255)                                                                                                                                 aaTTTGGTATTTAAGTGTTTTATGGCGATGCCACGCTGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCGGATGAACGNCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTACGCTGAAAACCGGGCGTCTGGCACTGGa                                                                                              <  1:252229/274‑1 (MQ=255)                                                                                                                                     tGGTTTGAAAGTGTTTTATGGCGATGCCGCGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGCGATGGCGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTGCGCTGAAAACCGGGCGTCTGGCACTGGAAAGtt                                                                                         <  1:291196/275‑1 (MQ=255)                                                                                                                                                 ttcgatatcgctctccagcgcatgacggtattccgagcttgccagcagtacgcccgccagaaacgcgcccatcgccatcgacGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACCTTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTGCGCTGAACACCGGGCGGCTGGCACTGGACAGTTCAGGTctgggtc                                                                             >  2:329694‑M2/83‑273 (MQ=255)                                                                                                                                                                             tattccgagcttgccagcagtacgcccgacagaaacgcgcccatcgccatcgacGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCg                                                                                                                                           >  1:229723‑M2/55‑185 (MQ=255)                                                                                                                                                                                 ccgagcttgccagcagtacgcccgccagaaacgcgcccatcgccatcgacGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGaa                                                                                                                                       <  2:229716‑M2/135‑1 (MQ=255)                                                                                                                                                                                     agcggCCGGAGCGGCGAAAGCGGAAGGGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTGCGCTGAAAACCGGGCGTCTGGCACTGGAAAGTTTAGGTCTg                                                                                 <  1:90946/231‑1 (MQ=255)                                                                                                                                                                                                                         cgccatcgacGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAg                                                                                                                                                                                                                                      >  1:35278‑M2/11‑50 (MQ=255)                                                                                                                                                                                                                            catcgacGAACCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCTCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTGCGCTGAAAACCGGGCGTCTGGCACTGGAAAGTTTAGGTCTGGGGCCGTATGAAGCGCGAGAACGTGCCGATGTGTTCCGCCGCTTTAATATTCAGATGGTGGAAGAGATCGCAATGGTTg  <  1:329706‑M2/268‑1 (MQ=255)                                                                                                                                                                                                                             atcgacGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACa                                                                                                                                                                                                                                  <  2:35278‑M2/44‑1 (MQ=255)                                                                                                                                                                                                                              tcgacGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCg                                                                                                                                           >  1:75620‑M2/6‑136 (MQ=255)                                                                                                                                                                                                                              tcgacGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTGCGCTGAAAACCGGGCGTCTGGCACTGGaa                                                                                             >  1:38055‑M2/6‑182 (MQ=255)                                                                                                                                                                                                                                  cGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGaa                                                                                                                                       <  2:75618‑M2/135‑1 (MQ=255)                                                                                                                                                                                                                                  cGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTGCGCTGAAAACCGGGCGTCTGGCACTGGAAAGtt                                                                                         <  2:38055‑M2/181‑1 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                            AGAACAGCCGCGCGTGATTATCGCCGGATTCGGTCGTTTTGGGCAGATTACCGGACGTTTACTGCTCTCCAGCGGGGTGAAAATGGTGGTACTCGATCACGATCCGGACCATATCGAAACCTTGCGTAAATTTGGTATGAAAGTGTTTTATGGCGATGCCACGCGGATGGATTTACTGGAATCTGCCGGAGCGGCGAAAGCGGAAGTGCTGATTAACGCCATCGACGATCCGCAAACCAACCTGCAACTGACAGAGATGGTGAAAGAACATTTCCCGCATTTGCAGATTATTGCCCGCGCCCGCGATGTCGACCACTACATTCGTTTGCGTCAGGCAGGCGTTGAAAAGCCGGAGCGTGAAACCTTCGAAGGTGCGCTGAAAACCGGGCGTCTGGCACTGGAAAGTTTAGGTCTGGGGCCGTATGAAGCGCGAGAACGTGCCGATGTGTTCCGCCGCTTTAATATTCAGATGGTGGAAGAGATGGCAATGGTTG  >  CP009273/48959‑49452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.