New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	227836 =	15 (0.870)	4 (0.240)	4/288	NT	20.9%	coding (228/801 nt)	yafD	endo/exonuclease/phosphatase family protein
	?	CP009273	228359 =	16 (0.980)					coding (751/801 nt)	yafD	endo/exonuclease/phosphatase family protein

TTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGTACCGAAGAGCGTATTCGGATCCTGGTGTGGAACATATACAAACAGCAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGTCGGCACTGGTGACGGTCTATCCATTACCTGACACCCGCCTGTTGATGGTGGTTAATATACACGCCGT  >  CP009273/227596‑228081                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      ttCAAAGTCAAAAGTGCGAATAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGTACCGAAGAGCGTATTCGGATCCTGGTGTGGAACATATACAAACAGCAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATTCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTg                                                                                                                                                                                                                     <  1:23243/275‑1 (MQ=255)   cAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGTACCGAAGAGCGTATTCGGATCCTGGTGTGGAACATATACAAACAGCAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGAGTTATTGCAGGAAGCGCAGACAAAGCCAGAGTTAGTACAGTTTGc                                                                                                                                                                                                                    >  1:190520/1‑274 (MQ=255)                   aatgaccctttcggcatatccctggcgggcggtgatatttttcagttgccgggcttcggcagcttgtgccacgacatccagcatgtgggcagataagtcatacgccaccaccgcgctcacgttttgctcagcgccaaacgttggtctgccctgtggcagacctgacatcccttatttatcaggcttgccgggactgaattcaacgagtcgcggattgtgaacGGAAgc                                                                                                                                                                                                                                                  <  1:116669‑M1/6‑1 (MQ=255)                                                             ggAAAGGATTTTACGGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGTACCGAAGAGCGTATTCGGATCCTGGTGTGGAACATATACAAACAGCAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCtt                                                                                                                                                         <  1:185313/275‑1 (MQ=255)                                                                                                         gggcagataagtcatacgccaccaccgcgctcacgttttgcgcagcgccaaacgttggtctgccctgtggcagacctgacataccttatttatcaggcttgccgggactgaattcaacgagtagcggattgtgatcg                                                                                                                                                                                                                                                       <  2:32277‑M1/1‑1 (MQ=255)                                                                                                             agataagtcatacgccaccaccgcgctcacgttttgcgcagcgccaaacgttggtctgccctgtggcagacctgacataccttatttatcaggcttgccggcaatgaattcaacgagtagcggattgtgatcGGAAg                                                                                                                                                                                                                                                   >  1:32277‑M1/133‑137 (MQ=255)                                                                                                                                            cGTATTCGGATCCTGATGTGGAATATATAGAAACAGCAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGATCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTTNCACAACATCCTTCTCGCGTAATGACCCTCTCGGCGCCACATCCAGCGTATTCATGCCCGTTCCGTGAACGAACAGCCATTATGctgcaggc                                                                          >  1:235032/1‑268 (MQ=255)                                                                                                                                                      tCCTGGTGTGGAACATATACAAACAGCAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGACCCTTTcgg                                                                                                                                    >  1:117159/1‑207 (MQ=255)                                                                                                                                                                        aaaaaCAGCCACTGGCTTAATTTTTGTCGGTGTTAAAGAAGTACGGCAAAGATGCATATAGGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACAATCTTGCCGCGGATCAGTTACCCGCTTTCGTGCTGCAACAACATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGTAGGCACTGGTGACGGTCTATCCa                                              <  2:284384/273‑1 (MQ=255)                                                                                                                                                                                cAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACANCATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGTCGGCACTGGTGACGTTCTa                                                  >  1:284395/1‑263 (MQ=255)                                                                                                                                                                                 gacctgacataccttatttatcaggcttgccgggactgaattcaacgagtagcggattgtgatcGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGt                                                                     <  2:15675‑M1/179‑1 (MQ=255)                                                                                                                                                                                     tgacataccttatttatcaggcttgccgggactgaattcaacgagtagcggattgtgatcGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGTCGGc                                                                 >  1:15675‑M1/61‑243 (MQ=255)                                                                                                                                                                                        tGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGTCGGCACTGGTGACGGTCTATACATTACCt                                        >  1:66337/1‑265 (MQ=255)                                                                                                                                                                                              ttatttatcaggcttgccgggactgaattcaacgagtagcggattgtgatcGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGAc                                                                                                                                                                                                                 <  2:279443‑M1/39‑1 (MQ=255)                                                                                                                                                                                               ttGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGtt                                                                                                                                                                                                                                >  1:243755/1‑74 (MQ=255)                                                                                                                                                                                                  ttatcaggcttgccgggactgaattcaacgagtagcggattgtgatcGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCt                                                                                                                                                                                                             >  1:279454‑M1/48‑90 (MQ=255)                                                                                                                                                                                                   cGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTa                                                                                                                                                                                                                            <  2:243747/74‑1 (MQ=255)                                                                                                                                                                                                                cTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTg                                                                                                                                                                                                                     >  1:79136/1‑68 (MQ=255)                                                                                                                                                                                                                cTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGTCGGCACTGGTGACGGGCTATCCATTACCTGACACCCGCCTGTTGAGGGTGGGTAATAGacac       >  2:72738/1‑274 (MQ=255)                                                                                                                                                                                                                    ggCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGAc                                                                                                                                                                                                                 <  2:79134/68‑1 (MQ=255)                                                                                                                                                                                                                     gCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACTCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGTCGGCACTGGTGACGGTCTATCCATTACCTGACACCCGCCTGTTGATGGTGGTTAATATACACGCCGt  <  1:184789/274‑1 (MQ=255)                                                                                                                                                                                                                                           aTTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGCCCCt                                                                                                                                         >  2:226426/1‑117 (MQ=255)                                                                                                                                                                                                                                               cAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCAGCCACAACATCCTTCTGGCGTAATGACCCTTTcg                                                                                                                                     <  1:226432/117‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      TTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGTACCGAAGAGCGTATTCGGATCCTGGTGTGGAACATATACAAACAGCAACGCGCTGAATGGTTGTCGGTATTAAAGAACTACGGCAAAGATGCACATCTGGTGTTATTGCAGGAAGCGCAGACAACGCCAGAGTTAGTACAGTTTGCGACCGCTAACTATCTTGCCGCCGATCAGGTACCCGCTTTCGTGCTGCCACAACATCCTTCTGGCGTAATGACCCTTTCGGCGGCACATCCAGTGTATTGCTGCCCGTTACGTGAACGAGAACCCATTTTGCGTCTGGCGAAGTCGGCACTGGTGACGGTCTATCCATTACCTGACACCCGCCTGTTGATGGTGGTTAATATACACGCCGT  >  CP009273/227596‑228081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.