New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	227836 =	15 (0.870)	4 (0.240)	4/288	NT	20.9%	coding (228/801 nt)	yafD	endo/exonuclease/phosphatase family protein
	?	CP009273	228359 =	16 (0.980)					coding (751/801 nt)	yafD	endo/exonuclease/phosphatase family protein

AGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACCGATGATCAGCGCCGTCGGGCGTTTGGTCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGCGCAAAACGTGAGCGCGGTGGTGGCGTATGACTTATCTGCCCACATGCTGGATGTCGTGGCACAAGCTGCCGAAGCCCGGCAACTGAAAAATATCACCACCCGCCAGGGATATGCCGAAAGTCTGCCATTTGCCGATAACGCATTTGATA  >  CP009273/228114‑228602                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    aGCAGTTACTTCCTATTGGCGTTCAGATAGCCCATCACAGCGGCCCGGTCATTATTGCGGGCGTGTTCAATGCCTGGAGCCGTGCACGGAAGAACGCGAGATCTGGCTCTTCGACACAAATGCCGCTGCCGCAGATGCGTTGTGTCGATGATTAGCGCCGTCGGGCCTTTGGTGGCACGCACCCTTTTTCTTTTTACCGTAGCCAGCACGGCAGTGCACCTTCTGGACTGGTTACGCCCCCTCCCGTACCCACGCCGCCACTCGTTgcgtata                                                                                                                                                                                                                          >  2:313152/1‑267 (MQ=255)      ttACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACCGATGATCAGCGCCGTCGGGCGTTTGGTCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCacgcgcgg                                                                                                                                                                                                                   >  1:7242/1‑268 (MQ=255)                ttGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTTCGCGGGACATGTCGCTGCGCCAGGTGCGTTTTACCGATGATCAGCTCCGTCGGGCGTTTGGTCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGCACGTCATTGAAGCTTCTGTACTGGTTACGCGCGCTTCCTATCACAACCCGCTACTCTTTGCATTCAGTCCCCGCacgacgga                                                                                                                                                                                                          >  2:51613/1‑267 (MQ=255)                                    agcaGGGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCGTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACCGATGATCAGCGCCGTCGGGCGTTTGGTCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTc                                                                                                                                                                                      <  1:51614/272‑1 (MQ=255)                                                               gccgacttcgccagacgcaaaatgggttctcgttcacgtaacgggcagcaatacactggatgtgccgccgaaagggtcattacgccagaaggatgttgtggcagcacgaaagcgggtacctgatcggcggcaagatagttagcggtcgcaaactgtactaactctggcgttgtctgcgcttccGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCa                                                                                                                                                                                          >  1:15675‑M2/184‑243 (MQ=255)                                                                aTTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACCGATGATCAGCGCCGTCGGGCGTTTGGTCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGgcgc                                                                                                                                                          <  1:204421/274‑1 (MQ=255)                                                                   acttcgccagacgcaaaatgggttctcgttcacgtaacgggcagcaatacactggatgtgccgccgaaagggtcattacgccagaaggatgttgtggcagcacgaaagcgggtacctgatcggcggcaagatagttagcggtcgcaaactgtactaactctggcgttgtctgcgcttccGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTc                                                                                                                                                                                      <  2:15675‑M2/64‑1 (MQ=255)                                                                                            gtaCGTGTTATATCGCTTTGCGCGAGATTTGTCGCTGCGCCAGGTGCGTGTTACCGATGATCAGCGCCGTCGGGCGTTCGGTCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCTGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGCGCAAAACGTGAGCGCGGTGGTGGCg                                                                                                                              <  1:313163/272‑1 (MQ=255)                                                                                                           cttgtcgcgGGGAAGGGCGCCGGGCCAGGTGCTTTTTGCCTATTGTCGGCGCCGTCGGGCGGTTGGTCGCCCGCTCGATTTTGTTTGCTACCGTGGTCTGAACGTAAGTGAAGCTTCTGTACTGGTTACGCGCGATTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGCGCAAAACGTGAGCGCGGTGGTGGCGTATGACTTATCTGccc                                                                                                              <  2:7242/270‑1 (MQ=255)                                                                                                                  cgGGAAATGTCGCTGCGCCAGGTGCGTTTTACCGATGATCAGCGCCGTCGGGCGTTTGGTCGCCCGCTCGATTTTCGTTTCTACCGTGGTCTGAACGTCAGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGTAGACCAACGTTTGGCGCTg                                                                                                                                                        <  1:273400/226‑1 (MQ=255)                                                                                                                                                                                                   tACCGTGGTCGGAACGTCAGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACATTCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGCCTGCCACAGGGCAGACCAACGTTTg                                                                                                                                                              >  1:333321/1‑139 (MQ=255)                                                                                                                                                                                                           agcggtcgcaaactgtactaactctggcgttgtctgcgcttccGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataa                                                                                                                                                                                                       >  1:279454‑M2/44‑90 (MQ=255)                                                                                                                                                                                                               gtcgcaaactgtactaactctggcgttgtctgcgcttccGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGataaataa                                                                                                                                                                                                   <  2:279443‑M2/51‑1 (MQ=255)                                                                                                                                                                                                                     aGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACt                                                                                                                                                                                                                                     >  1:55682/1‑50 (MQ=255)                                                                                                                                                                                                                       tGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGCGCAAAACGTGAGCGCGGTGGTGGCGTNTGACTTATCTGCCCACATGCTGGATGTCGTGGCACAAGCTGCCGAAGCCCGGCAACTGAAAAATATCACCACCCGCCAGGTATATGCCGAAAGTCTGCCATTTGCCGATAACGCATTTGata  >  1:285082/1‑275 (MQ=255)                                                                                                                                                                                                                         aaGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGtt                                                                                                                                                                                                                                 <  2:55680/50‑1 (MQ=255)                                                                                                                                                                                                                              tCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTa                                                                                                                                                                                                                                       >  2:17/1‑39 (MQ=255)                                                                                                                                                                                                                              tCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCt                                                                                                                                                                                     >  1:1481/1‑89 (MQ=255)                                                                                                                                                                                                                                  tACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCg                                                                                                                                                                                                                                   <  1:17/39‑1 (MQ=255)                                                                                                                                                                                                                                  tACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCca                                                                                                                                                                                 <  2:1481/89‑1 (MQ=255)                                                                                                                                                                                                                                                gcttccGTTCACAATCCGCGACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGGATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGAGCAAAACGTGAGCGCGGTGGTGGCGTATGACTTATCTGCCCACATGCTGGATGTCGTGGCACAAGCTGCCGAAGCCCGGCAACTGAAAAATATCACCGCCCGCCAGGGATATgccgaaagggtcatt                        <  1:116669‑M2/222‑8 (MQ=255)                                                                                                                                                                                                                                                 cttccGATCACAATCCGCTACTCGTTGAATTCATTGCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGCGCAAAACGTGAGCGCGGTGGTGGCGTATGACTTATCt                                                                                                                  >  1:32277‑M2/6‑137 (MQ=255)                                                                                                                                                                                                                                                     cGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGCGCAAAACGTGAGCGCGGTGGTGGCGTATGACTTATCTGccc                                                                                                              <  2:32277‑M2/136‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    AGCAGTTACTTCCTATTGGCGATCAGATAGCTCACCACAGCGGCCCGGTCATTATGGCGGGAGATTTCAATGCCTGGAGCCGTAGAAGGATGAACGCGTTATATCGCTTTGCGCGGGAAATGTCGCTGCGCCAGGTGCGTTTTACCGATGATCAGCGCCGTCGGGCGTTTGGTCGCCCGCTCGATTTTGTTTTCTACCGTGGTCTGAACGTCAGTGAAGCTTCTGTACTGGTTACGCGCGCTTCCGATCACAATCCGCTACTCGTTGAATTCAGTCCCGGCAAGCCTGATAAATAAGGTATGTCAGGTCTGCCACAGGGCAGACCAACGTTTGGCGCTGCGCAAAACGTGAGCGCGGTGGTGGCGTATGACTTATCTGCCCACATGCTGGATGTCGTGGCACAAGCTGCCGAAGCCCGGCAACTGAAAAATATCACCACCCGCCAGGGATATGCCGAAAGTCTGCCATTTGCCGATAACGCATTTGATA  >  CP009273/228114‑228602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.