New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	356557 =	22 (1.270)	7 (0.420)	5/292	NT	19.4%	coding (855/1155 nt)	cynX	putative cyanate transporter
	?	CP009273	356650 =	37 (2.230)					coding (948/1155 nt)	cynX	putative cyanate transporter

TACTTCGGTCTGATTAACGGCGGTTACGCCAGCCTGATTGCCTGGTTACCCGCTTTCTATATTGAGATTGGTGCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCA  >  CP009273/356312‑356818                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                      tACTTCGGTCTGATTAACGGCGGTTACGCCAGCCTGATTGCCTGGTTACCCGCTTTCTATATTGAGATTGGTGCCAGCTCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCTAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGt                                                                                                                                                                                                                                           <  1:322867/274‑1 (MQ=255)                                                       ttCTATATTGAGATTGGTGCCGGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGNTGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCtgt                                                                                                                                                                                    >  1:230778/1‑275 (MQ=255)                                                                      ggTCCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGTTGACGCTTGGGCGAGCCGCAGGCGCCTTGCTGATGCCTGCTATGGCTAGCCATCAGGATCGCCGCAAACTGTTAATGCTCGCGACGGTGTTACAACTGGTGGGGTTCTGCGGTTTTCTCTTGCTGCCGCTGTCATCGCCGGTCTTGTGGGCCGTGGTGTGTGGTTTAGCTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCGGGGGCTCGTTCCCTCTGGGccccctgcttctct                                                                                                                                                                     >  2:43693/1‑262 (MQ=255)                                                                                  gaGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCGTTGCTGAGGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCtgg                                                                                                                                                          <  1:43694/273‑1 (MQ=255)                                                                                       agggttatgatcatcagcccaacgacgcacagcgcatgaaatgcccagtccatcaggtaattgccgctgatactacgcagcacgccagaaaaccacggggcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGTGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCg                                                                                                                                                                                              <  1:36732‑M1/74‑1 (MQ=255)                                                                                               ccTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATGAGGATCGGCGCAAACTGTTAATGCGGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGTGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGTTGGCAAGATGGTGGCGTGTATGcgg                                                                                                                                            >  1:68312/1‑273 (MQ=255)                                                                                                    cTGGCATTGATGACGCTTGGGCAAGCCGCAGGTGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAAATGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGTCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGaa                                                                                                                                        <  1:321458/274‑1 (MQ=255)                                                                                                               gaCGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACGGTTAATGCTGGCGCTGGGGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGCCTGCCGATGCAATTGCCGGTATTGTGTGCGATGGTGTGTGGGTTGGGTCTGGGCTGTCCGTTTCCGCTCTGTTTGTTCCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGGTATCTGGTGGCGTTTATGCCGGGACATGGttttcat                                                                                                                             >  2:37278/1‑271 (MQ=255)                                                                                                                     tGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGcc                                                                                                                                                                                                                                                                     <  1:35222/132‑1 (MQ=255)                                                                                                                                 ggggcgtttGTTGATGCCGGCTGTGGCTCGCCATCAGGTTCGGCGCAAACTGTTAATGCTGGCGGTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCg                                                                                                           <  2:230771/268‑1 (MQ=255)                                                                                                                                       tttGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTa                                                                                                                                                                         >  2:81745/1‑206 (MQ=255)                                                                                                                                           cTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGc                                                                                                                                                                     <  1:81747/206‑1 (MQ=255)                                                                                                                                                        tGGCTCGCCCTCAGGGTCGGCGCTCACTGTTTATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCTGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGTGCTGCgtagt                                                                                   <  1:187541/275‑1 (MQ=255)                                                                                                                                                                                      tattgttGGGGCTGGGGTTACACCTGGTGGGGTTCTGTGGCTGTAGCTGGCTGCCGATGCATGGGCCGGTATTGTGGGCGAGGGTGTGTGGGTTAGGGCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGc                                                      <  1:37278/268‑1 (MQ=255)                                                                                                                                                                                      cggggcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCg                                                                                                                                                                                              <  2:30894‑M1/74‑1 (MQ=255)                                                                                                                                                                                          gcaagcccggcgatgataaaaccgattccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCa                                                                                                                                                                                          >  1:30894‑M1/61‑138 (MQ=255)                                                                                                                                                                                                 cTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCg                                                                                                                                                                                                                                                                    <  2:17251/57‑1 (MQ=255)                                                                                                                                                                                                 cTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATc                                                                                                                                      <  1:162532/183‑1 (MQ=255)                                                                                                                                                                                                               ggtggGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTgg                                                                                                >  2:68321/1‑207 (MQ=255)                                                                                                                                                                                                                 tggGGATCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCAGTGGTTTTCTGGCGTGCTGCGTAGTATCAGTGGCAAGTACCTGa                                                                >  1:82971/1‑237 (MQ=255)                                                                                                                                                                                                                 gattccctgcataaacgccaccagcttgccagcaataGCCg                                                                                                                                                                                                                                                                    <  2:32418‑M1/4‑1 (MQ=255)                                                                                                                                                                                                                   tttcagatatttttttTCTGGGTTNGGATGCTATTGCCGGTATTGTTGGTGATGGTGTGTGGGTTAGGTCTGGGCGGCTCGTTTCCTCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCTCTGTGCGTCGTTGGGCtgat                        <  2:193295/263‑1 (MQ=255)                                                                                                                                                                                                                   ttccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCg                                                                                                                                                                                              <  2:110594‑M1/74‑1 (MQ=255)                                                                                                                                                                                                                   gggTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGtg                                                                                            <  1:68323/207‑1 (MQ=255)                                                                                                                                                                                                                    tccctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCg                                                                                                                                                                                              <  2:205813‑M1/74‑1 (MQ=255)                                                                                                                                                                                                                    ggTTCTGCTGCTTTATCTGTCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCtgat                        <  1:191864/274‑1 (MQ=255)                                                                                                                                                                                                                       ctgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCa                                                                                                                                                                                          >  1:110596‑M1/32‑109 (MQ=255)                                                                                                                                                                                                                        tgcataaacgccaccagcttgccagcaataGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCa                                                                                                                                                                                          >  1:205819‑M1/31‑108 (MQ=255)                                                                                                                                                                                                                        cTGCGGTTTTTTCTGGCTGCTGTTGCTATTGCCGGTATTGTTGGGGATGGTGTGTGGGTTAGGTCTGGGCTGCGCTTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTTTCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCa                   <  1:29431/275‑1 (MQ=255)                                                                                                                                                                                                                        cTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTtgctg                                                                                                                                                                                                        >  2:37857/1‑94 (MQ=255)                                                                                                                                                                                                                            ggCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTgg                                                                                                                                                                                                    <  1:37857/94‑1 (MQ=255)                                                                                                                                                                                                                                          gCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCTGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGGTGAGGATCATAAcccatgtctcatat  >  1:193299/1‑263 (MQ=255)                                                                                                                                                                                                                                                    ttGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTgctgct                                                                                                                                                                                                      >  1:218941/1‑68 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                      TACTTCGGTCTGATTAACGGCGGTTACGCCAGCCTGATTGCCTGGTTACCCGCTTTCTATATTGAGATTGGTGCCAGCGCGCAGTACAGCGGTTCCTTACTGGCATTGATGACGCTTGGGCAAGCCGCAGGAGCTTTGCTGATGCCTGCTATGGCTCGCCATCAGGATCGGCGCAAACTGTTAATGCTGGCGCTGGTGTTACAACTGGTGGGGTTCTGCGGCTTTATCTGGCTGCCGATGCAATTGCCGGTATTGTGGGCGATGGTGTGTGGGTTAGGTCTGGGCGGCGCGTTTCCGCTCTGTTTGCTGCTGGCGCTCGATCACTCTGTGCAACCGGCTATTGCTGGCAAGCTGGTGGCGTTTATGCAGGGAATCGGTTTTATCATCGCCGGGCTTGCCCCGTGGTTTTCTGGCGTGCTGCGTAGTATCAGCGGCAATTACCTGATGGACTGGGCATTTCATGCGCTGTGCGTCGTTGGGCTGATGATCATAACCCTGCGTTTTGCA  >  CP009273/356312‑356818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.