New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 359542	19 (1.100)	4 (0.240)	4/288	NT	17.8%	pseudogene (525/1125 nt)	lacZ	pseudogene, truncated
	?	CP009273	= 359651	19 (1.160)					pseudogene (416/1125 nt)	lacZ	pseudogene, truncated

AGTAAGGCGGTCGGGATAGTTTTCTTGCGGCCCTAATCCGAGCCAGTTTACCCGCTCTGCTACCTGCGCCAGCTGGCAGTTCAGGCCAATCCGCGCCGGATGCGGTGTATCGCTCGCCACTTCAACATCAACGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCGGGATGGCGTG  >  CP009273/359281‑359811                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                              aGTAAGGCGGTCGGGATAGTTTTCTTGCGGCCCTAATCCGAGCCAGTTTACCCGCTCTGCTACCTGCGCCAGCTGGCAGTTCAGGCCAATCCGCGCCGGATGCGGTGTATCGCTCGCCACTTCAACATCAACGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATTCTGCCACGCGTGAGCGGTCGTCATCAGCACCGCATCCGCAAGTGTATCTGCCGTCCACTCcaacccgtct                                                                                                                                                                                                                                                                   >  1:73074/1‑268 (MQ=255)                                         aGCCAGTTTACCCGCTCTGCTACCTGCGCCAGCTGGCAGTTCAGGCCAATCCGCGCCGGATGCGGTGTATCGCTCGCCACTTCAACATCAACGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGCTAAATAAAGTTTTCCCCTGATGCTGCCCCGCTTGAGCGTACGTAATCAGAACCGCATCAGCAAGTGTATCTTCCTGGCACTGCAACAACGCTACGCAGGCAGGGCAATACCCCgccgccccccctcctttta                                                                                                                                                                                                                           >  2:274500/1‑261 (MQ=255)                                                                  gcgcCAGCTGGCAGTTCAGGCCAATCCGCGCCGGATGCGGTGTATCGCTCGCCACTTCAACATCAACGGTAATCGCCATTTGACCACTACCCTCCATCCTGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTACTCAGCACCGCTCCAGCAAGTGTATCTGCCGTGCCCTGCCACACAGCTTCTTCGGCCCTGTAATTGCTCGCCGCCTTCAAGCGTTCCNCCCAGGCGCTANNTACAATgtcttc                                                                                                                                                                                                  >  2:227395/1‑269 (MQ=255)                                                                                 tctggCCAATCCGCGCCGGATGCGGTGTATCGCTCGCCACTTCAACATCAACGGTAACCGCCATTTGACCACTACCATCAATCCGTTAGGTTTTCCGGCTGATAAATAAGGTTTTCNCCTGATGCTGTGACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCa                                                                                                                                                                                  <  1:307426/272‑1 (MQ=255)                                                                                                                              cATCAACGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACcgctggataacgacattggcgtaagtgaagcgacccgcattgaccctaacgcctgggtcgaacgctggaaggcggcgggcca                                                                                                                                                                                             >  1:100687‑M1/1‑137 (MQ=255)                                                                                                                                  aaCGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGNTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGAACGGTCGAACTGATCGCGCAGCGGCGTca                                                                                                                                 <  1:227401/275‑1 (MQ=255)                                                                                                                                  aaCGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACcgctggataacgacattggcgtaagtgaagcgacccgcattgaccctaacgcctgggtcgaacgctggaaggcggcgggccattac                                                                                                                                                                                         <  2:100685‑M1/219‑87 (MQ=255)                                                                                                                                      gTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTACGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTcagca                                                                                                                              >  1:175794/1‑274 (MQ=255)                                                                                                                                                                                                  ttCCCCTGATGCTGCCACGCGTGAGCGGTTGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACTCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTTACTGGCGGTTAAATTGCCa                                                                 <  1:274511/275‑1 (MQ=255)                                                                                                                                                                                                                          gCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCCGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGTTGCACGCGTGAACTGATCGCGCAGCGGCGTCAGCCGTTGCTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGAGGTTAAATTGCCAACGCTTCTTACCCAGCTCTAttc                                          >  2:229191/1‑272 (MQ=255)                                                                                                                                                                                                                              tCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGGCCGCCGCCTTCCAGCGTTNGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGTAAACCGTTATTACACAGCTCGATGCaaaa                                      <  1:229198/274‑1 (MQ=255)                                                                                                                                                                                                                                      aGCACCGCATGAGCAAGTGTATCTGCCGTGCACcgctggataacgacattggcgtaagtgaagcgacccgcattgaccctaacgcctgggt                                                                                                                                                                                                                     >  1:326737‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                                        cACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATgg                                                                                                                                                                                                                                                 >  2:83890/1‑61 (MQ=255)                                                                                                                                                                                                                                        cACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAgg                                                                                                                                                                                                                     >  2:130851/1‑89 (MQ=255)                                                                                                                                                                                                                                        cACCGAATCAGCAAGTGTATCTGCCGTGCACTTCAACAACgctgctcc                                                                                                                                                                                                                                                              >  2:101932/1‑46 (MQ=255)                                                                                                                                                                                                                                          ccGCATCAGCAAGTGTATCTGCCGTGCACcgctggataacgacattggcgtaagtgaagcgacccgcattgaccctaacgcctgggtcgaa                                                                                                                                                                                                                 <  2:326725‑M1/91‑63 (MQ=255)                                                                                                                                                                                                                                            gCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCccg                                                                                                                                                                                                                                             <  1:83892/61‑1 (MQ=255)                                                                                                                                                                                                                                            gCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGtt                                                                                                                                                                                                                 <  1:130853/89‑1 (MQ=255)                                                                                                                                                                                                                                            gCATCAACAAGTGTATCTGCCGTGAACTGCAACAACGCTGCTTCGGcc                                                                                                                                                                                                                                                          <  1:101934/48‑1 (MQ=255)                                                                                                                                                                                                                                                 aGCAAGTGTACCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGAACCAGGCGTTAGTGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGc                                                                                                               <  1:155698/182‑1 (MQ=255)                                                                                                                                                                                                                                                         tctcgtccttgcaatgcaaCCACGCGGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCATCGTTCGACGCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCggg          <  2:51178/266‑1 (MQ=255)                                                                                                                                                                                                                                                             tGCCGTGCACTGCAACAACGCTGCTTCGGCATGGTAATGGCCCGCCGCCt                                                                                                                                                                                                                                       >  2:33888/1‑50 (MQ=255)                                                                                                                                                                                                                                                                cGTGCACcgctggataacgacattggcgtaagtgaagcgacccgcattga                                                                                                                                                                                                                                    >  1:300848‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                                                cGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCGGGATGGCGt   >  1:51179/1‑275 (MQ=255)                                                                                                                                                                                                                                                                 gTGCACTGCAACAACGCTGCTTCGGCATGGTAATGGCCCGCCGCCTTCCa                                                                                                                                                                                                                                   <  1:33888/50‑1 (MQ=255)                                                                                                                                                                                                                                                                  tGCACTGCAACAACGCTGCTTCGGCCTGCTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAANAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGTTCAGATGCGGGATGGCGTg  >  1:251901/1‑274 (MQ=255)                                                                                                                                                                                                                                                                    cACcgctggataacgacattggcgtaagtgaagcgacccgcattgaccct                                                                                                                                                                                                                                <  2:300837‑M1/50‑48 (MQ=255)                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                              AGTAAGGCGGTCGGGATAGTTTTCTTGCGGCCCTAATCCGAGCCAGTTTACCCGCTCTGCTACCTGCGCCAGCTGGCAGTTCAGGCCAATCCGCGCCGGATGCGGTGTATCGCTCGCCACTTCAACATCAACGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCGGGATGGCGTG  >  CP009273/359281‑359811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.