New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 359542	19 (1.100)	4 (0.240)	4/288	NT	17.8%	pseudogene (525/1125 nt)	lacZ	pseudogene, truncated
	?	CP009273	= 359651	19 (1.160)					pseudogene (416/1125 nt)	lacZ	pseudogene, truncated

AACGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCGGGATGGCGTGGGACGCGGCGGGGAGCGTCACACTGAGGTTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCC  >  CP009273/359410‑359879                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                     aaCGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGNTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGAACGGTCGAACTGATCGCGCAGCGGCGTca                                                                                                                                                                                                     <  1:227401/275‑1 (MQ=255)     gTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTACGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTcagca                                                                                                                                                                                                  >  1:175794/1‑274 (MQ=255)                                                                 ttCCCCTGATGCTGCCACGCGTGAGCGGTTGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACTCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTTACTGGCGGTTAAATTGCCa                                                                                                                                     <  1:274511/275‑1 (MQ=255)                                                                                         gCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCCGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGTTGCACGCGTGAACTGATCGCGCAGCGGCGTCAGCCGTTGCTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGAGGTTAAATTGCCAACGCTTCTTACCCAGCTCTAttc                                                                                                              >  2:229191/1‑272 (MQ=255)                                                                                             tCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGGCCGCCGCCTTCCAGCGTTNGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGTAAACCGTTATTACACAGCTCGATGCaaaa                                                                                                          <  1:229198/274‑1 (MQ=255)                                                                                                                aGCAAGTGTACCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGAACCAGGCGTTAGTGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGc                                                                                                                                                                                   <  1:155698/182‑1 (MQ=255)                                                                                                                        tctcgtccttgcaatgcaaCCACGCGGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCATCGTTCGACGCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCggg                                                                              <  2:51178/266‑1 (MQ=255)                                                                                                                               cGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCGGGATGGCGt                                                                       >  1:51179/1‑275 (MQ=255)                                                                                                                                 tGCACTGCAACAACGCTGCTTCGGCCTGCTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAANAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGTTCAGATGCGGGATGGCGTg                                                                      >  1:251901/1‑274 (MQ=255)                                                                                                                                                ctgctTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAgcggcg                                                                                                                                                                                                        >  2:291452/1‑129 (MQ=255)                                                                                                                                                        gCCTGGTAATGGCCCTCCGCCTTCGAGCGGTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATNGCCAAAGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATTCGGGATGGCGTGGGACGCGGCGGGGAGCGTCACACt                                              >  1:231021/1‑275 (MQ=255)                                                                                                                                                             gTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGgtgcacggcagatacacttgctgatgcggtgctgattacgaccgctcacgcgtggcagcatcaggggaaaaccttatttatcagccggaaaacctaccggattgatggtagtggtcaaatggcgattaccgtt                                                                                                 <  2:100685‑M2/219‑134 (MQ=255)                                                                                                                                                             gTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCgg                                                                                                                                                >  2:200524/1‑172 (MQ=255)                                                                                                                                                                 tGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGgtgcacggcagatacacttgctgatgcggtgctgattacgaccgctcacgcgtggcagcatcaggggaaaaccttatttatcagccggaaaacctaccggattgatggtagtggtcaaatggcgattaccgttgatg                                                                                             >  1:100687‑M2/1‑82 (MQ=255)                                                                                                                                                                 tGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTaa                                                                                                                                            <  1:200530/172‑1 (MQ=255)                                                                                                                                                                                     ttCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGgtgcacggcagatacacttgctgatgcgg                                                                                                                                                                                                         <  2:326725‑M2/91‑30 (MQ=255)                                                                                                                                                                                         aCCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGgtgcacggcagatacacttgctcatgcggtgct                                                                                                                                                                                                     >  1:326737‑M2/1‑58 (MQ=255)                                                                                                                                                                                                cGTTTGGGTCAATTCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCGGGATGGCGTGGGACGCGGCGGGGAGCGTCACACTGAGGTTTTCCGCCAGACGCCTCTGCTGCCAGGCGCTGAtg      <  1:267337/275‑1 (MQ=255)                                                                                                                                                                                                 gTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGNGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCGGGATGGCGTGGGACGCGGCGGGGAGCGt                                                    <  1:280714/228‑1 (MQ=255)                                                                                                                                                                                                    aGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGgtg                                                                                                                                                                                                                                   <  2:300837‑M2/50‑4 (MQ=255)                                                                                                                                                                                                     gggTCAAGGCGGGTCGCTCTCCCTAGGCCAGTTGCTTTATCCAGCGTGCCACGGGTGAATTGCTGTCGGCTCGGCGTCCGTATTTGTTTTTTTTCTCCAATCCACATCTGTCAAAGAAAGCCTGACCTGCGGTTCAATTGCCAACGATTACTACCTAGCGCGATGCAAAAATCCATTTCGCGGGTGGTTAGATGCGGGACGGCGTGGGACGCGGCGGGGAGCGTCACCCTGAGGTTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGcc  <  2:231014/274‑1 (MQ=255)                                                                                                                                                                                                        tCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGgtgcacg                                                                                                                                                                                                                               >  1:300848‑M2/1‑43 (MQ=255)                                                                                                                                                                                                        tCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAgcgg                                                                                                                                                                                                          >  2:236208/1‑71 (MQ=255)                                                                                                                                                                                                            tGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTc                                                                                                                                                                                                      <  1:236215/71‑1 (MQ=255)                                                                                                                                                                                                                                       cGTTATCCAGCGGTGCACGGGTGAACTGATCTCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCcac                                                                                                                                                                           <  1:161933/71‑1 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                     AACGGTAATCGCCATTTGACCACTACCATCAATCCGGTAGGTTTTCCGGCTGATAAATAAGGTTTTCCCCTGATGCTGCCACGCGTGAGCGGTCGTAATCAGCACCGCATCAGCAAGTGTATCTGCCGTGCACTGCAACAACGCTGCTTCGGCCTGGTAATGGCCCGCCGCCTTCCAGCGTTCGACCCAGGCGTTAGGGTCAATGCGGGTCGCTTCACTTACGCCAATGTCGTTATCCAGCGGTGCACGGGTGAACTGATCGCGCAGCGGCGTCAGCAGTTGTTTTTTATCGCCAATCCACATCTGTGAAAGAAAGCCTGACTGGCGGTTAAATTGCCAACGCTTATTACCCAGCTCGATGCAAAAATCCATTTCGCTGGTGGTCAGATGCGGGATGGCGTGGGACGCGGCGGGGAGCGTCACACTGAGGTTTTCCGCCAGACGCCACTGCTGCCAGGCGCTGATGTGCC  >  CP009273/359410‑359879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.