New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	490033 =	25 (1.440)	4 (0.240)	4/294	NT	14.2%	coding (173/606 nt)	recR	gap repair protein
	?	CP009273	490217 =	24 (1.430)					coding (357/606 nt)	recR	gap repair protein

CGACGCAGCACGTCGTATTGAAGAAACGCAGAAAGAAAAAATGGCCTCTGTATCCTCCGGAATGCAGCTGCCGCCTGGCTTTAAGATGCCGTTCTGATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACA  >  CP009273/489765‑490249                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                         cgacgCAGCCCGCCGTATTGAAGAAACGCAGAAAGAAAAAATGGCCTCCGTATCCTCCGGAAAGCAGCTGACGCATGGCTTTAAGATGCCGTCCTTATGCAAACCAGCCCGCTGTCAACACAGCTTCTGGAAGCACTGCGCTGGCTGCCGGGCTCTGGCCCGAAGTCGGCGACGCGTATGGCGTTAACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGAGGCGGGCGAAGGCGCTGCCCCGGGCGAGTTCGGTAATAGGNCACTGCTCCgggta                                                                                                                                                                                                                    >  2:244465/1‑271 (MQ=255)         caCGTCGTATTGAAGAAACGCAGAAAGAAAAAATGGCCTCTGTATCCTCCGGAATGCAGCTGCCGCCTGGCTTTAAGATGCCGTTCTGATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACtt                                                                                                                                                                                                            >  1:42564/1‑275 (MQ=255)                        agtcGCAGAAAGAAAAAATGGCCTCTGTATCCTCCGGAATGCAGCTGCCGCCTGGCTTTAAGATGCCGTTCTGATGCATACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTAGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCAACGAACAGGaa                                                                                                                                                                                              <  1:333523/271‑1 (MQ=255)                                          agagacaggTAGCCTCCGGAACGCGGCTGCGGCCTGGCTTTAAGATGCCGGTCTGAGGCAAACCAGCCCGGTGGTAACACAGCTTAGGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAGGTCGGCGCAGGGGATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCGGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGtt                                                                                                                                                                              <  2:93548/264‑1 (MQ=255)                                                          cGGAATGCAGCTGCCGCCTGGCTTTAAGATGCCGTTCTGATGCAAACCAGCCCGCTGTTAAAACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCCGGCGCTCACCCGGGCGATGTCGGGAATCGGCCACTGCGccct                                                                                                                                                                                                                       >  2:65654/1‑213 (MQ=255)                                                             aaTGCAGCTGCCGCCTGGCTTTAAGATGCCGTTCTGATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATc                                                                                                                                                                                  >  1:93550/1‑249 (MQ=255)                                                                  gcgggcggccTGGCTTTAAGGTGCCGGTCTGATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGt                                                                                                                                                    <  2:42563/267‑1 (MQ=255)                                                                                        gCCGTTCTGATGCAAACCAGCCCGGTGTCAACACAGCTTGTGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCNATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGtggtgg                                                                                                                                    >  1:232635/1‑268 (MQ=255)                                                                                                           gCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGa                                                                                                                                                                                                                       >  1:49538/1‑166 (MQ=255)                                                                                                               gCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGc                                                                                                                                                                                                                   <  2:49537/166‑1 (MQ=255)                                                                                                                 tGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCCCCGAACAGGCAGTCTGTAACATCTGTTCGAATCCGCGTCGCCAGGAAAACGGTAAACTCTGCGTGGTGTAGACTCCGGCGGACATCTACGCACTTGAGCAg                                                                                                    >  1:28095/1‑275 (MQ=255)                                                                                                                           gCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAg                                                                                                                                                                                                 >  1:237465/1‑172 (MQ=255)                                                                                                                           gCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTa                                                                                                                                                                                       >  2:253173/1‑182 (MQ=255)                                                                                                                               aTGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAg                                                                                                                                                                                             <  2:237458/172‑1 (MQ=255)                                                                                                                               aTGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACAt                                                                                                                                                                                   <  1:253181/182‑1 (MQ=255)                                                                                                                                      cACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGt                                                                               >  1:316300/1‑275 (MQ=255)                                                                                                                                            gcgcaaagctcggcaatgtggttagcggtagcttcaccttcaaccgtggggttggtggcgaggatcacttcagtgattttttcctctgccagacgctgttccagacgatcaagcccgatatcatccggaCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCgtcgtc                                                                                                                                                               <  1:266821‑M1/60‑1 (MQ=255)                                                                                                                                             cTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCAGCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTAtttt                                                                         >  1:293123/1‑274 (MQ=255)                                                                                                                                                aaagctcggcaatgtagttagcggtagcttcaccttcaaccgtggggttggtggcgaggatcacttcagtgattttttcctctgccagacgctgttccagacgatcaagcccgatatcatccggaCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGa                                                                                                                                                           >  2:266813‑M1/126‑189 (MQ=255)                                                                                                                                                                ccGAAGTCGGCGCAGCGTATGGCGTTAACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGNCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGAGGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGt                                                      <  1:244473/274‑1 (MQ=255)                                                                                                                                                                        ggCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGATAGTCCGTCGGACGTCTCCGACATTGACCAGACGGGGCAGTTTTCAGGTCATTATTTTGTGTTGGTGAGGCATCTGTCACCGCggg                                             >  1:98524/1‑275 (MQ=255)                                                                                                                                                                              gCGTATGGTGTTCTCTCTGCTTGTGCGTGATCGTAGCGGCGTGATGCGTCTGGCGCAGGCGCTCCCTCGTGCGATGTCGGAAATCGGCCACTGCGCCCATTTCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTTGTGGAGAGTCCTGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGTGGCATCTGTCACCGCTGGACGGCa                                       <  1:178795/275‑1 (MQ=255)                                                                                                                                                                                 tATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTa                                                                                                                 >  1:12543/1‑198 (MQ=255)                                                                                                                                                                                 tATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTa                                                                                                                 <  2:12543/198‑1 (MQ=255)                                                                                                                                                                                          cACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGaaag                                                                                                                                                        >  1:269601/1‑149 (MQ=255)                                                                                                                                                                                              ctgctTCAGCGCGATCGGAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGt                                                                                                                                                    <  2:269591/150‑1 (MQ=255)                                                                                                                                                                                                  gtggcgaggatcacttcagtgattttttcctctgccagacgctgttccagacgatcaagcccgatatcatccggaCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAg                                                                                                                                                             <  1:153249‑M1/62‑1 (MQ=255)                                                                                                                                                                                                      cgaggatcacttcagtgattttttcctctgccagacgctgttccagacgatcaagcccgatatcatccggaCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGaaa                                                                                                                                                         >  2:153245‑M1/72‑137 (MQ=255)                                                                                                                                                                                                       cgcgATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACGGCGCCGATTGCCGCACTTTCACCGNACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGa              <  1:263565/275‑1 (MQ=255)                                                                                                                                                                                                                   ggggggATGCGGCTCGCGCAGGCCCCCCCCCGGCCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGGGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACa  <  2:316289/272‑1 (MQ=255)                                                                                                                                                                                                                       ggATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAg                                                                                                                                                                                                 >  1:53313/1‑80 (MQ=255)                                                                                                                                                                                                                           gCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAg                                                                                                                                                                                             <  2:53311/80‑1 (MQ=255)                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                         CGACGCAGCACGTCGTATTGAAGAAACGCAGAAAGAAAAAATGGCCTCTGTATCCTCCGGAATGCAGCTGCCGCCTGGCTTTAAGATGCCGTTCTGATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCGTATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACA  >  CP009273/489765‑490249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.