New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	490033 =	25 (1.440)	4 (0.240)	4/294	NT	14.2%	coding (173/606 nt)	recR	gap repair protein
	?	CP009273	490217 =	24 (1.430)					coding (357/606 nt)	recR	gap repair protein

CGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCACCACGTTGTCACACTCCCTTGCCGGGCGTCATAAGA  >  CP009273/489963‑490455                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                               cgcgATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACGGCGCCGATTGCCGCACTTTCACCGNACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGa                                                                                                                                                                                                                            <  1:263565/275‑1 (MQ=255)             ggggggATGCGGCTCGCGCAGGCCCCCCCCCGGCCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGGGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACa                                                                                                                                                                                                                <  2:316289/272‑1 (MQ=255)                                                                                                         tAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGCTATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGGGGAAAAAATCACTGAAGTGAACCTCGCCACCAACCCCACGGTGGAAGGTGAAGCTCACGCGAAATNNACTGcactgct                                                                                                                      >  2:240665/1‑267 (MQ=255)                                                                                                                 gTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGCTGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCTTCTGGCAGAGGACACAATCACTGACGTGATCCTCGCCACCAACCCCACGGTTGACGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCa                                                                                                             >  1:190572/1‑274 (MQ=255)                                                                                                                 gTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCTGATGATNTCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCCCCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTCCCGAGCTTTacgcgcca                                                                                                            >  1:282422/1‑273 (MQ=255)                                                                                                                                         aCGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGCCATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTAACGATAACTACATTGCCGAGCTTTGCGCGCAATATAACGGTGAAGCCAGCCGAAtg                                                                                    >  1:131680/1‑274 (MQ=255)                                                                                                                                                                  tCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGgcggcg                                                           >  1:79325/1‑275 (MQ=255)                                                                                                                                                                     ggcggACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCAGAGCTTTACGCGCAATATGACGGGGAAGCCAGCCGCATCGCCCATGGCGTTCCTTGTGGCGGCGAg                                                         >  2:55763/1‑274 (MQ=255)                                                                                                                                                                                             tttcctgacgacgcggattcgaacagatgttacagacttcctgttcggtgaaagtgcggcaatcggTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCg                                                                                                                                                                          >  2:153245‑M2/67‑137 (MQ=255)                                                                                                                                                                                               tcctgacgacgcggattcgaacagatgttacagacttcctgttcggtgaaagtgcggcaatcggTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCttt                                                                                                                    >  2:266813‑M2/65‑189 (MQ=255)                                                                                                                                                                                                 ctgacgacgcggattcgaacagatgttacagacttcctgttcggtgaaagtgcggcaatcggTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGccac                                                                                                                                                                      <  1:153249‑M2/75‑1 (MQ=255)                                                                                                                                                                                                   gacgacgcggattcgaacagatgttacagacttcctgttcggtgaaagtgcggcaatcggTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACCACATTGCCGAGCTTTgcgc                                                                                                                <  1:266821‑M2/129‑1 (MQ=255)                                                                                                                                                                                                   gCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGc                                                                                                                                                                         >  2:158708/1‑132 (MQ=255)                                                                                                                                                                                                   gCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCGGGAAAT‑GTCGACGGCACCACGTGGTcaca                         >  1:17948/1‑275 (MQ=255)                                                                                                                                                                                                     tttaaaggtatggTTATTTGTGGTGGATGGTGCATCTGTTCTCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGGTCGTCTGGAACAGCTGCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCGCGGTTGAAGGTGAAGCTACCGCTATCTACATTGCCGAGCTTTGAGCGCAATAGGACGTGGAAGCCAGCCGAACCGCTCCTGGCGTTCCGGTTGGCGGAGAGCTGGAAATGGTCGACGGCACCACGTTGTcaca                         <  2:44765/262‑1 (MQ=255)                                                                                                                                                                                                     aGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCCCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTGGACGGCCCCCCGTTGTcaccc                        >  2:304819/1‑273 (MQ=255)                                                                                                                                                                                                       ttttCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTg                                                                                                                                                                                                         >  1:193683/1‑96 (MQ=255)                                                                                                                                                                                                       ttttCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGccacc                                                                                                                                                                     <  1:158712/132‑1 (MQ=255)                                                                                                                                                                                                         ttgaGGTCGTTTTTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGNCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCACCACGTTGTCACACTcc                     <  1:240672/271‑1 (MQ=255)                                                                                                                                                                                                           cAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCag                                                                                                                                                                                                     <  2:193679/96‑1 (MQ=255)                                                                                                                                                                                                                 gTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTgcg                                                                                                                 >  1:172023/1‑174 (MQ=255)                                                                                                                                                                                                                     ttttGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCa                                                                                                             <  2:172019/174‑1 (MQ=255)                                                                                                                                                                                                                            ttGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCATCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGAGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCCGCGAGCTGGAAATGGTCGACGGCACCACGTTATCACACTACCTTGCCgatgtctcttaaa  >  1:44766/1‑262 (MQ=255)                                                                                                                                                                                                                                 ggggAATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCt                                                                                                                                             >  2:63801/1‑130 (MQ=255)                                                                                                                                                                                                                                     cATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCg                                                                                                                                         <  1:63803/130‑1 (MQ=255)                                                                                                                                                                                                                                             actgCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTTGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCt                                                                                                                                       <  1:200651/121‑1 (MQ=255)                                                                                                                                                                                                                                             aCCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTgg                                                                                                                                                                                                                    >  1:257435/1‑47 (MQ=255)                                                                                                                                                                                                                                                 cTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACa                                                                                                                                                                                                                <  2:257427/47‑1 (MQ=255)                                                                                                                                                                                                                                                     aCGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCt                                                                                                                      >  1:138347/1‑133 (MQ=255)                                                                                                                                                                                                                                                         cATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTgc                                                                                                                  <  2:138344/133‑1 (MQ=255)                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                               CGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGTGTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAGAGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCACCACGTTGTCACACTCCCTTGCCGGGCGTCATAAGA  >  CP009273/489963‑490455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.