New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1046753	15 (0.870)	6 (0.370)	5/288	NT	31.4%	intergenic (‑122/‑164)	cspH/cspG	stress protein, member of the CspA‑family/cold shock protein homolog, cold‑inducible
	?	CP009273	= 1046950	12 (0.730)					coding (34/213 nt)	cspG	cold shock protein homolog, cold‑inducible

AATGCGGAAATATGGACCTGAACTTCTTTACGACCGTCGGAGGGGATAATGAATCCTTTGCCGCTTTTGCGATCAAAGGTTTTGACAATTCCTGTCATTTTACGGGACAAACAAATTCCTTACTGAAAATACTGCGCTGCACTATACGGGGTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACC  >  CP009273/1046522‑1047021                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                             aaTTCGGAAATCTGGACCTAAACTTCTTTACGACCGTCGGAGGGTATTATGAATCCTTTGCCGCTTTTGCGATCAAAGGTTTTGACAATTCCTGTCATTTTACGGGACAAACAAATTCCTTACTGAAAATACTGCGCTGCACTATACGGGGTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGtt                                                                                                                                                                                                                                    <  2:66200/274‑1 (MQ=255)                                                                                         ttCCTGTCATTTTACGGGACAAACAAATTCCTTACTGAAAATACTGCGCTGCACTATACGGGGTTGATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAAaccattttactaa                                                                                                                                                                                                                                                                 >  2:291226‑M1/1‑144 (MQ=255)                                                                                         ttCCTGTCATTTTACGGGACAAACAAATTCCTTACTGAAAATACTGCGCTGCACTATACGGGGTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAAaccattttactaaaccagtcattttattagacatattttacttccttcattttgggcctttcggcaaacagggctttaatacagaaactacttagtgttcaggagagagactcaaaagaaggggataatg                                                                                                                                            >  2:72207‑M1/1‑144 (MQ=255)                                                                                             tGTCATTTTACGGGACAAACAAATTCCTTACTGAAAATACTGCGCTGCACTATACGGGGTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAAaccattttactaaaccagtcattttattagacatattttacttccttcattttgggcctttcggcaaacagggctttaatacagaaactacttagtgttcaggagagagactcaaaagaaggggataatgcctg                                                                                                                                        <  1:72209‑M1/274‑135 (MQ=255)                                                                                             tGTCATTTTACGGGACAAACAAATTCCTTACTGAAAATACTGCGCTGCACTATACGGGGTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAAaccattttactaaacca                                                                                                                                                                                                                                                             <  1:291237‑M1/157‑18 (MQ=255)                                                                                                                                     tGCGCTGCACTATACGGGGTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGaa                                                                                                                                                                          >  2:76915/1‑200 (MQ=255)                                                                                                                                         cTGCACTATACGGGGTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACt                                                                                                                                                                      <  1:76917/200‑1 (MQ=255)                                                                                                                                                      ggTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAag                                                                                                                                                                                                                                                          >  1:138172/1‑103 (MQ=255)                                                                                                                                                      ggTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAANACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGATTAGTaaa                                                                              >  1:265025/1‑275 (MQ=255)                                                                                                                                                          aataaaataaAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAagacag                                                                                                                                                                                                                                                      <  2:138169/103‑1 (MQ=255)                                                                                                                                                                  tatatgagactgatttaagaccgccgAACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGAAGTTCTCATTATCAGTCACTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTttaacg                                                                   >  1:294617‑M2/13‑268 (MQ=255)                                                                                                                                                                    aGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATaaaa                                                                                              >  1:37687/1‑245 (MQ=255)                                                                                                                                                                        aGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGAc                                                                                          <  2:37687/245‑1 (MQ=255)                                                                                                                                                                         gCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAatat                                                                                                         >  1:38208/1‑229 (MQ=255)                                                                                                                                                                             taattAAGAACGCCGGAAGGCTAAAATAAAATTTGATTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTAATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACAATAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCt                                                                                                     <  2:38208/226‑1 (MQ=255)                                                                                                                                                                                ttAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAAaccattttacta                                                                                                                                                                                                                                                                  >  1:162629‑M1/1‑57 (MQ=255)                                                                                                                                                                                    gACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAAaccattttactaaacc                                                                                                                                                                                                                                                              <  2:162625‑M1/69‑17 (MQ=255)                                                                                                                                                                                         ccgGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTACGTAGTTTCTGTATTAAAGCCTGTTTTGCCGAAAGGCCAAAAATGAAGGAAGTAAAATATGTCAACTAAAATAACTGATTTAGTAAAAGGGTTTAACACAGATAAAGNTTTTTGATTTAtaa                                           >  2:249554/1‑273 (MQ=255)                                                                                                                                                                                         ccgGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAAt                                                                                                                         >  1:150350/1‑197 (MQ=255)                                                                                                                                                                                             aCGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATgaag                                                                                                                     <  2:150346/197‑1 (MQ=255)                                                                                                                                                                                                                               cATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACaaa                                                                                                                                                                                                                                          >  2:157804/1‑46 (MQ=255)                                                                                                                                                                                                                                   cGTTAAaccattttactaaaccagtcattttattagacatattttacttccttcattttgggcctttcggcaaacagggctttaatacagaaactacttagtgttcaggagagagactcaaaagaaggggatagtgactgataatgagaacttctttagtaaactactttgtatgctgtctgtctttcaaaccgacgcagctattaacgcatgataattgagattaagcaaattttattttagccgttcggcggtcttaaatcagtctcatata  >  1:294617‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                   cGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAagtag                                                                                                                                                                                                                                      <  1:157808/46‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                             AATGCGGAAATATGGACCTGAACTTCTTTACGACCGTCGGAGGGGATAATGAATCCTTTGCCGCTTTTGCGATCAAAGGTTTTGACAATTCCTGTCATTTTACGGGACAAACAAATTCCTTACTGAAAATACTGCGCTGCACTATACGGGGTTAATAAAATAAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACC  >  CP009273/1046522‑1047021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.