New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1046753	15 (0.870)	6 (0.370)	5/288	NT	31.4%	intergenic (‑122/‑164)	cspH/cspG	stress protein, member of the CspA‑family/cold shock protein homolog, cold‑inducible
	?	CP009273	= 1046950	12 (0.730)					coding (34/213 nt)	cspG	cold shock protein homolog, cold‑inducible

AAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACCGCCATCCAGAGCAATGAATTCCGCACGCTGAACGAAAATCAGAAAGTTGAATTTTCTATTGAGCAGGGGCAACGTGGCCCCGCGGCAGCGAACGTTGTTACGCTCTAAGGTTGCCATTATTACTCAACATCTCCATTTCCGCTGTCCATGTTGTCATGGTTCA  >  CP009273/1046683‑1047184                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           tatatgagactgatttaagaccgccgAACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGAAGTTCTCATTATCAGTCACTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTttaacg                                                                                                                                                                                                                                      >  1:294617‑M2/13‑268 (MQ=255)                        ccgGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTACGTAGTTTCTGTATTAAAGCCTGTTTTGCCGAAAGGCCAAAAATGAAGGAAGTAAAATATGTCAACTAAAATAACTGATTTAGTAAAAGGGTTTAACACAGATAAAGNTTTTTGATTTAtaa                                                                                                                                                                                                              >  2:249554/1‑273 (MQ=255)                                                                                                              agtTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTGTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTNTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCATCGCCATCCAGAGCAATGAATTCCGCACGCTGAACGAAAATCAGaa                                                                                                                         >  1:244219/1‑274 (MQ=255)                                                                                                                 ttACTAAAGCAGTCNTCATTATCAGGATTTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTATGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCATCGCCATCCAGAGCAATGAATTCCGCACGCTGAACGAAAATCAGAAAGtt                                                                                                                     <  2:244211/275‑1 (MQ=255)                                                                                                                   aCTAAAGCAGTTCTCATTATCAGGCATTATACCCTTCTTTTGAGTATCTCTCCTGAACACTAAGTAGTATCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAATGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTGTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACCGCCATCCAGAGCAATGAATTCCGCACGCTGAACGAAAATCAGAAAGtt                                                                                                                     <  1:192923/273‑1 (MQ=255)                                                                                                                               ctcATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAACATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACCGCCATCCAGAGCAATGAATTCCGCACGCTGAACGAAANTCATAAGATGGAATTTTcgaatta                                                                                                       >  2:200122/1‑269 (MQ=255)                                                                                                                                       cAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTttaacgcatgataattgagattaagcaaattttattttagccgtccggcggtcttaaatatcgctggctttattttattaaccccgtatagtgcagcgcagtattttcagtaaggaatttgtttgtcccgtaaaatgaca                                                                                                <  1:72209‑M2/274‑141 (MQ=255)                                                                                                                                           cATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTttaacgcatgataattgagattaagcaaattttattttagccgtccggcggtcttaaatatcgctggctttattttattaaccccgtatagtgcagcgcagtattttcagtaaggaatttgtttgtcccgtaaaatgacaggaa                                                                                            >  2:72207‑M2/1‑130 (MQ=255)                                                                                                                                                                            cacTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTGAACGCAGATAAAGGTTTTGGCTTTATAACTCCTGATGATGGCAGCAAAGACGTTTCCGGCTATTTCACAGCAATCGCGAGCAATGAATTCCGCACGCTGAACGAAAATCACAAAATTACATTTTCTATTGAGCAGGGGAAACGTGTCACAGAGGCAGCGAAGGTTGGTACActtca                                                          >  2:84549/1‑272 (MQ=255)                                                                                                                                                                               tAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCAc                                                                                                                                                                      >  2:196075/1‑164 (MQ=255)                                                                                                                                                                                   tagtTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACCGcc                                                                                                                                                                  <  1:196079/164‑1 (MQ=255)                                                                                                                                                                                           gTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACCGCCa                                                                                                                                                                 >  2:100375/1‑157 (MQ=255)                                                                                                                                                                                               tAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAAGAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACCGCCATCCa                                                                                                                                                             <  1:100377/157‑1 (MQ=255)                                                                                                                                                                                                              cGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACCGCCATCCAGAGCAATGAATTCCGCACGCTGAACGAAAATCAGAAAGTTGAATTTTCTATTGAGCAGGGGCAACGTGGCCCCGCGGCAGCGAACGTTGTTACGCTCTAAGGTTGACATTATTACTCAACATCTCCATTTCCg                        <  1:200128/275‑1 (MQ=255)                                                                                                                                                                                                                                    gTAAAATATGTCTTATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAANACGTTTTCGTCCATTTCACCGCCATCCAGAGCAATGAATTCCGCACGCTGAACGAAAATCAGAAAGTTGAATTTTCTATTGAGCAGGGGCAACGTGGCCCCGCGGCAGCGAACGTTGTTACGCTCTAAGGTTGCCATTATTACTCAACATCTCCATTTCCGCTGTCCATGTTGTCATGGTTca  <  1:249562/275‑1 (MQ=255)                                                                                                                                                                                                                                                            tGGTTTAGTAAAATGGTttaacgcatgataattgagattaagcaaattttattttagccgtccggcggtcttaaatatcgctggctttattttattaaccccgtatagtgcagcgcagtattttcagtaaggaatttgtttgtcccgtaaaatgaca                                                                                                <  1:291237‑M2/157‑141 (MQ=255)                                                                                                                                                                                                                                                             ggTTTAGTAAAATGGTttaacgcatgataattgagattaagcaaattttattttagccgtccggcggtc                                                                                                                                                                                       <  2:162625‑M2/69‑54 (MQ=255)                                                                                                                                                                                                                                                                ttAGTAAAATGGTttaacgcatgataattgagattaagcaaattttattttagccgtccggcggtcttaaatatcgctggctttattttatcaaccccgtatagtgcagcgcagtattttcagtaaggaatttgtttgtcccgtaaaatgacaggaa                                                                                            >  2:291226‑M2/1‑13 (MQ=255)                                                                                                                                                                                                                                                                 tAGTAAAATGGTttaacgcatgataattgagattaagcaaattttattttagccgtccggcggtcttaa                                                                                                                                                                                   >  1:162629‑M2/1‑12 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                           AAAGCCAGCGATATTTAAGACCGCCGGACGGCTAAAATAAAATTTGCTTAATCTCAATTATCATGCGTTAATAGCTGCGTCGGTTTGAAAGACAGACAGCATACAAAGTAGTTTACTAAAGCAGTTCTCATTATCAGGCATTATCCCCTTCTTTTGAGTCTCTCTCCTGAACACTAAGTAGTTTCTGTATTAAAGCCCTGTTTGCCGAAAGGCCCAAAATGAAGGAAGTAAAATATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCAGATAAAGGTTTTGGCTTTATCACTCCTGATGATGGCAGCAAAGACGTTTTCGTCCATTTCACCGCCATCCAGAGCAATGAATTCCGCACGCTGAACGAAAATCAGAAAGTTGAATTTTCTATTGAGCAGGGGCAACGTGGCCCCGCGGCAGCGAACGTTGTTACGCTCTAAGGTTGCCATTATTACTCAACATCTCCATTTCCGCTGTCCATGTTGTCATGGTTCA  >  CP009273/1046683‑1047184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.