New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1092774 =	1 (0.060)	6 (0.370)	4/288	NT	46.2%	intergenic (+489/+247)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	CP009273	1093039 =	13 (0.790)					noncoding (70/88 nt)	serX	tRNA‑Ser

GCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTG  >  CP009273/1092520‑1092896                                                                                                                                                                                                                                                               |                                                                                                                           gatctacaaaggccaccagcataacaaatccgtggtcggtggcaaaaaaagcagatttcgcttattaaaaccacacattgattgaagtttgaataaacgcgcgattttttcaaaaagtttgttgacctcaggtcatgatttccctaaattagcgcccgttccaccaagacaggaacgacaattnggtgaggtgtccgagtggctgaaggagcacgcctggaaagtgtgtatacggcaacgtatcgggggttagaATCCCCCCGGTGTGTGCAat                                                                                                         <  1:260099‑M1/20‑1 (MQ=255)                                                aaagaatatttctcttattaaactcacatattgtgtgaagtttacataatcgcgcgtttttttcaaaaagtttgttgacctcaggtcatgatttccctaagttagcgcccgttccagcaagacaggaacgacaagtgggtgaggtgtccgagtggctgaaggagcacgcctggaaagtgtgtatacggcaacgtatcgggggttcgaATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAata                                                           >  2:260091‑M1/208‑273 (MQ=255)                                                                 ttaaaaccacacattgattgaagtttgaataaacgcgcgattttttcaaaaagtttgttgacctcaggtcatgatttccctaaattagcgcccgttccagcaagacaggaacgacaatttggtgaggtgtccgagtggctgaaggagcacgcctggaaagtgtgtatacggcaacgtatcgggggttcgaATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTa                                                               <  2:304490‑M1/62‑1 (MQ=255)                                                                     aaccacacattgattgaagtttgaataaacgcgcgattttttcaaaaagtttgttgacctcaggtcatgatttccctaaattagcgcccgttccagcaagacaggtacgacaatttggtgaggtgtccgagtggctgaaggagcacgcctggaaagtgtgtatacggcaacgtatcgggggttcgaATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAata                                                           >  1:304501‑M1/187‑252 (MQ=255)                                                                                                                                         gatttccctaaattagcgcccgttccagcaagacaggaacgacaatttggtgaggtgtccgagtggctgaaggagcacgcctggaaagtgtgtatacggcaacgtatcgggggttcgaATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTa                                                               <  2:104181‑M1/62‑1 (MQ=255)                                                                                                                                             tccctaaattagcgcccgttccagcaagacaggaacgacaatttggtgaggtgtccgagtggctgaaggagcacgcctggaaagtgtgtatacggcaacgtatcgggggttcgaATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAata                                                           >  1:104183‑M1/115‑180 (MQ=255)                                                                                                                                                       agcgcccgttccagcaagacaggaacgacaatttggtgaggtgtccgagtggctgaaggagcacgcctggaaagtgtgcatacggcaacgtatcgggggttcgaATc                                                                                                                          >  1:244372‑M1/105‑107 (MQ=255)                                                                                                                                                                                                             gTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCATGCGGGCAGCCCGCTCACTg  >  1:296855/1‑173 (MQ=18)                                                                                                                                                                                                                                                               |                                                                                                                           GCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTG  >  CP009273/1092520‑1092896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.