New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1092774 =	1 (0.060)	6 (0.370)	4/288	NT	46.2%	intergenic (+489/+247)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	CP009273	1093039 =	13 (0.790)					noncoding (70/88 nt)	serX	tRNA‑Ser

CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATC  >  CP009273/1092779‑1093292                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                              CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCCCCAGTTNTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATCGGAAAAAAAAACCCGTACTTTCGTCCCCGCCCTCCGTTACAAATGGGGGtgcgggggggattcatatgctacacta                                                                                                                                                                                                                                                 <  1:278946‑M1/275‑14 (MQ=255)                                                                                  aCTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGCAAAAAAACCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACCTTTCCTTATTACCACTTTCCCGGCGGGACCCTTCACCCACCAGGACCACTCACCCACTTGTCCGTCCTTTCTTGTTTGaa                                                                                                                                                                >  2:322427/1‑275 (MQ=14)                                                                                                                                    tCCAACTGGCTGTCGCCAGTTGTCGAACGCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCNCTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCTCTAATTTAGGGAAATCATGACCTGAGGTAAACAAACTTTTTGaa                                                                                                              >  1:231333/1‑275 (MQ=255)                                                                                                                                            gCTGTCGCCAGTTGTCGACCCCCGGTCGTGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTCCTCCTTCAGCCACTCGGACNCCTCACCAAATTGTCGTTCCTGTCTTGCt                                                                                                                                                                    >  1:262441/1‑213 (MQ=255)                                                                                                                                                                    gTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACg                                                                                                                                                              >  1:162648/1‑195 (MQ=255)                                                                                                                                                                                             tgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTcc                                                                                                                                                                                                                 >  1:83162/1‑119 (MQ=255)                                                                                                                                                                                                 cAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCa                                                                                                                                                                                                             <  2:83160/119‑1 (MQ=255)                                                                                                                                                                                                   tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCCACTTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAACTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTGAAAAAAACGCGCGATTATGTAAACTTCACACAATATGTGAGTTTAATAAGAGAAATATTCttt                                                 >  2:260091‑M2/67‑273 (MQ=255)                                                                                                                                                                                                   tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGa                                                                                                                                              >  1:104183‑M2/67‑180 (MQ=255)                                                                                                                                                                                                   tatttaaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTACCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGtt                                                                      >  1:304501‑M2/67‑252 (MQ=255)                                                                                                                                                                                                    tataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCACCCACTCGGACACCTCACCAAATTTTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTGAAAAAATCGCCCGTTTATTCAAACTTCAACAAATGTGCGGTTTGAATAAGCGAAATCTGCttt                                                 >  2:333411/1‑272 (MQ=255)                                                                                                                                                                                                       taaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATc                                                                                                                                          <  2:104181‑M2/118‑1 (MQ=255)                                                                                                                                                                                                       taaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTtaa                                                                  <  2:304490‑M2/190‑1 (MQ=255)                                                                                                                                                                                                       aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta                                                                                                                                                                                                                                        >  1:35374/1‑86 (MQ=39)                                                                                                                                                                                                         gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtata                                                                                                                                                                                                                                      >  2:324634/1‑86 (MQ=38)                                                                                                                                                                                                           aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATaca                                                                                                                                                                                                                                    <  2:35374/86‑1 (MQ=38)                                                                                                                                                                                                             aaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATAAGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATacaca                                                                                                                                                                                                                                  <  1:324646/86‑1 (MQ=255)                                                                                                                                                                                                                aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGAcc                                   <  1:168764/274‑1 (MQ=255)                                                                                                                                                                                                                                                 attgcacacaccggggggatTCTAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCNAATTGTCGTTCCTGTCTTGGTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATc  <  1:260099‑M2/254‑1 (MQ=255)                                                                                                                                                                                                                                                    ggCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACg                                                                                                                                                              >  2:97910/1‑115 (MQ=255)                                                                                                                                                                                                                                                        gTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGgcg                                                                                                                                                          <  1:97912/115‑1 (MQ=255)                                                                                                                                                                                                                                                                  gatTCGAACCCCCGATACGTTGCCGTATGCACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCt                                                                                                                                                        >  1:244372‑M2/4‑107 (MQ=255)                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                              CCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATC  >  CP009273/1092779‑1093292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.