New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1685314 =	9 (0.520)	3 (0.180)	3/294	NT	22.5%	coding (1206/1509 nt)	ydgA	DUF945 family protein
	?	CP009273	1685886 =	12 (0.720)					coding (1223/1266 nt)	uidC	putative outer membrane porin for beta‑glucuronides porin protein

TGACGGAAGCCTTCTTTAGCGCCCTGCCGCTGATGCTGAAAGGCGATCCGGTGATTACTATCGCGCCGCTAAGCTGGAAAAACAGTCAGGGTGAAAGTGCCCTGAATCTGTCGCTGTTCCTGAAAGATCCGGCAACGACTAAAGAAGCGCCGCAAACGCTGGCGCAGGAAGTAGATCGTTCGGTTAAATCTCTGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAATGGGGCAGATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGC  >  CP009273/1685121‑1685573                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                    catttgcaccgattgtgactcgcggctatgaatccagtaaacgagatgtgcggattgaaggcacgggtatcttaggtggtatgaactatcgggtcagcgaagggccgttacaagggatgaatttctttcttgctgccgataaagggcgggaaaagcgcgatggcagtacgctgggcgatcgcctgaattactgGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCCGGTAGCGAAGATGGACGGTTATCAGGaa                                                                                                                                                                                       <  1:71330‑M1/79‑1 (MQ=255)                                              aTCCGGTGATTACTATCGCGCCGCTAAGCTGGAAAAACAGTCAGGGTGAAAGTGCCCTGAATCTGTCGCTGTTCCTGAAAGATCCGGCAACGACTAAAGAAGCGCCGCAAACGCTGGCGCAGGAAGTAGATCGTTCGGTTAAATCTCTGGATGCGAAACTGACCAt                                                                                                                                                                                                                                                    >  2:85521/1‑166 (MQ=255)                                                  ggTGATTACTATCGCGCCGCTAAGCTGGAAAAACAGTCAGGGTGAAAGTGCCCTGAATCTGTCGCTGTTCCTGAAAGATCCGGCAACGACTAAAGAAGCGCCGCAAACGCTGGCGCAGGAAGTAGATCGTTCGGTTAAATCTCTGGATGCGAAACTGACCATTCCg                                                                                                                                                                                                                                                <  1:85523/166‑1 (MQ=255)                                                              cgcgCCGCTAAGCTGGAAAAACAGTCAGGGTGAAAGTGCCCTGAATCTGTCGCTGTTCCTGAAAGATCCGCCAACGACTAAAGAAGCGCCGCAATCGCTGGCGCAGGAAGTAGATCGTTCGGTTAAATCTCTGGCTGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGCAAGGTTATCAGCAAGATACTGCGAAACAACTGGCGAAAAAGAAATCAGAAGATGCATCAGATAAGGGGAAGATGttg                                                                                                                        >  2:303915/1‑273 (MQ=255)                                                                                                     cttgtaTCTGTTGTTGTTCCTGAAAGAGCCGGCAACGACTAAAGAAGCGCCGCAAACGCTGGCGCAGGAAGTAGATGGTTCGGTTAAATCTCTGGATGCGAAACGGACCATTCCGGTGGATATTGCAACTGAGTTTATGACACAGGTAGCGAAGCTAGAAGGTTATCAGGAAGATCAAGCGAAAAAACTTGCGAAACAGCAAGTTGAAGGTGCATCAGCAATGGGGCAGATGTTCCGTCTGACCACCTTGCAGGACAATACCATCAccacca                                                                                   <  1:120884/267‑1 (MQ=255)                                                                                                            ttacaagggatgaatttctttcttgctgccgataaagggcgggaaaagcgcgatggcagtacgctgggcgatcgcctgaattactgGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAATGGGGCAGATGTTcc                                                                                                                       <  1:13290‑M1/143‑1 (MQ=255)                                                                                                                aagggatgaatttctttcttgctgccgataaagggcgggaaaagcgcgatggcagtacgctgggcgatcgcctgaattactgGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAATGGGGCAGATGTTCCGTCt                                                                                                                   >  2:13290‑M1/83‑229 (MQ=255)                                                                                                                           aaaGATCCGTCAACTACTAAAGATGCGCCGCACACGCTGGCGCAGGAAGTAGATCGTTCGGTTAAATCTCTGTATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCATGTAGCGTAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAATCTGTCGAAACTGCAAGTTGAAGGTGCATCAGCAATGGGGCAGATGTTCCGTCTGACCACCTTg                                                                                                         <  1:131148/228‑1 (MQ=255)                                                                                                                                                                                   ttCGGTTAAATCTCTGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGt                                                                                                                                                                                                                             >  2:230398/1‑56 (MQ=255)                                                                                                                                                                                    tCGGTTAAATCTCTGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCACGCGAAAAAACTGGCGAAACAGCACGTTGAAGGTGCATCAGCAATGGGGCAGATGTTCCGTCTGACCACCTTGAAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAAATTTTGTTGGCATAtttttttttc  >  2:275072/1‑267 (MQ=255)                                                                                                                                                                                    tCGGTTAAATCTCTGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAATGGGGCAGATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGc  <  1:275083/274‑1 (MQ=255)                                                                                                                                                                                       gTTAAATCTCTGGATGCGAAACTGACTCTTCACGAGGATAGGGCAACTGAGTTTAt                                                                                                                                                                                                                         <  1:230405/56‑1 (MQ=255)                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                    TGACGGAAGCCTTCTTTAGCGCCCTGCCGCTGATGCTGAAAGGCGATCCGGTGATTACTATCGCGCCGCTAAGCTGGAAAAACAGTCAGGGTGAAAGTGCCCTGAATCTGTCGCTGTTCCTGAAAGATCCGGCAACGACTAAAGAAGCGCCGCAAACGCTGGCGCAGGAAGTAGATCGTTCGGTTAAATCTCTGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTTATGACTCAGGTAGCGAAGCTGGAAGGTTATCAGGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAATGGGGCAGATGTTCCGTCTGACCACCTTGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAATGGGCAGAAAATGTCGTTAGAAGATTTTGTTGGCATGTTTGCGATGC  >  CP009273/1685121‑1685573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.