New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1685314 =	9 (0.520)	3 (0.180)	3/294	NT	22.5%	coding (1206/1509 nt)	ydgA	DUF945 family protein
	?	CP009273	1685886 =	12 (0.720)					coding (1223/1266 nt)	uidC	putative outer membrane porin for beta‑glucuronides porin protein

CTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGACCCGATAGTTCATACCACCTAAGATACCCGTGCCTTCAATCCGCACATCTCGTTTACTGGATTCATAGCCGCGAGTCACAATCGGTGCAAATG  >  CP009273/1685697‑1686078                                                                                                                                                                                              |                                                                                                                                                                                                 cTTGTCAGGCGTACCTTTTCCTTCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTaa                                                                                                             <  2:64067/275‑1 (MQ=255)                                           agacggaacatctgccccattgctgatgcaccttcaacttgctgtttcgccagttttttcgcttgatcttcctgataaccttccagcttcgctacctgagtcataaactcagttgccatatccaccggaatggtcagtttcgcatccCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCtt                                                                                                                 >  2:13290‑M2/148‑229 (MQ=255)                                               ggaacatctgccccattgctgatgcaccttcaacttgctgtttcgccagttttttcgcttgatcttcctgataaccttccagcttcgctacctgagtcataaactcagttgccatatccaccggaatggtcagtttcgcatccCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTaa                                                                                                             <  1:13290‑M2/86‑1 (MQ=255)                                                                        ccgcATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCGGCACGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGACCCGATAGtt                                                                                     >  1:169633/1‑228 (MQ=255)                                                                                                    tGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTc                                                                                                                                                       >  2:324785/1‑134 (MQ=255)                                                                                                        aacaaTCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGc                                                                                                                                                   <  1:324797/134‑1 (MQ=255)                                                                                                            aTCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATc                                                                                                                                                                                  >  2:292239/1‑99 (MQ=255)                                                                                                               ttcctgataaccgtccatcttcgctaccggagtcataaactcagttgccatatccaccggaatggtcagtttcgcatccCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGACCCGATAGTTCATACCACCTAAGATACCCGTGCCTTCAATCCGCACATCTCGTTTACTGGATTCATAGCCGCGAGTCACAATCGGTGCAAATg  <  1:71330‑M2/193‑1 (MQ=255)                                                                                                                gAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGccc                                                                                                                                                                              <  1:292250/99‑1 (MQ=255)                                                                                                                                      ccGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGACCCGATAGTTCATACCACCTaa                                                                         >  2:172184/1‑178 (MQ=255)                                                                                                                                          cGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGACCCGATAGTTCATACCACCTAAGATa                                                                     <  1:172188/178‑1 (MQ=255)                                                                                                                                                                      tACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGAc                                                                                              >  2:134296/1‑125 (MQ=255)                                                                                                                                                                          gAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGACCCGa                                                                                          <  1:134298/125‑1 (MQ=255)                                                                                                                                                                           aaTACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGAc                                                                                              >  1:79057/1‑120 (MQ=255)                                                                                                                                                                               cTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGACCCGa                                                                                          <  2:79055/120‑1 (MQ=255)                                                                                                                                                                                              |                                                                                                                                                                                                 CTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTTCACATCCCAGTAATTCAGGCGATCGCCCAGCGTACTGCCATCGCGCTTTTCCCGCCCTTTATCGGCAGCAAGAAAGAAATTCATCCCTTGTAACGGCCCTTCGCTGACCCGATAGTTCATACCACCTAAGATACCCGTGCCTTCAATCCGCACATCTCGTTTACTGGATTCATAGCCGCGAGTCACAATCGGTGCAAATG  >  CP009273/1685697‑1686078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.