New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1743657	14 (0.810)	3 (0.180)	3/292	NT	25.6%	coding (160/813 nt)	ydhT	FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex
	?	CP009273	= 1743735	4 (0.240)					coding (82/813 nt)	ydhT	FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex

CCGGAGCTGCCAATGTGACTGTTAAAGCCGACACTTCCAATCCGCACGC‑TATAACCCATACTGGCAATTTGCGCGGCATACCCAGCGGTTGCGATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAGGAACC  >  CP009273/1743407‑1743758                                                                                                                                                                                                                                                            |                                                                                                      agggggcagCCAATGTCATTGTGAAAGCCGCCACCTCCCAGCCGCACGCGTAT‑ACCCCTCGTGGCAATTTTCGGGGCTTATCCGTCGGTTGCTAGTCTGGCGTCAGCCTCACAACCGCCGATCCGAGTATGCTCGGCGCTGCGGGCAGACTGACTGCAAAATGGTCTCTCTCCGGGGGCTGTGGCCAGTTTTTGCATAAAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTGTTCCACGCATACTCAGCCAGACTCTCCGCCCa                                                                               <  2:313392/267‑1 (MQ=255)            aaTGTGACTGTTAAAGCCGACACTTCCAATCCGCACGC‑TATAACCCATACTGGCAATTTGCGCGGCATACCCAGCGGTTGCGATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCA‑TTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATAtc                                                                    <  1:84543/274‑1 (MQ=255)                                                             aCTGGCAATTTGCGCGGCATACCCAGCGGTTGCGATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGc                                                                                  >  2:125605/1‑213 (MQ=255)                                                                 gCAATTTGCGCGGCATACCCAGCGGTTGCGATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAg                                                                              <  1:125607/213‑1 (MQ=255)                                                                 gCAATTTGCGCGGCAGACCCACCGGTTGCCATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCNACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCTGCATAACTACCGCCGCGTGGGa                 >  1:232321/1‑274 (MQ=255)                                                                                                    ggCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCggcggtagttatgccgagattcatcatgcactgattgaggaaggatatacggactgggcggaga                                       >  1:212102‑M1/1‑153 (MQ=255)                                                                                                                                                                aaaTGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCAACGCATACTCAACCAg                                                                                           >  2:32323/1‑105 (MQ=255)                                                                                                                                                                    ggTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGActc                                                                                       <  1:32323/105‑1 (MQ=255)                                                                                                                                                                                      gtgGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGta                                                                        >  1:180150/1‑102 (MQ=255)                                                                                                                                                                                          ccAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATAtc                                                                    <  2:180146/102‑1 (MQ=255)                                                                                                                                                                                                        gagGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCggcggtagttatgccgatattcatcatgcactgattgaggaaggatatacggactgggcggaga                                       >  1:73753‑M1/1‑53 (MQ=255)                                                                                                                                                                                                        gagGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAgg      >  2:321491/1‑150 (MQ=255)                                                                                                                                                                                                            aaaCTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCggcggtagttatgccgatattcatcatgcactgattgaggaaggatatacggactgggcggagagtct                                   <  2:73751‑M1/117‑69 (MQ=255)                                                                                                                                                                                                            aaaCTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAGGAAcc  <  1:321503/150‑1 (MQ=255)                                                                                                                                                                                                                                          ccagccaTTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGta                                                                        >  2:95639/1‑50 (MQ=255)                                                                                                                                                                                                                                          ccagccaTTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTAccgc                          >  1:118115/1‑96 (MQ=255)                                                                                                                                                                                                                                              ccaTTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATAtc                                                                    <  1:95641/50‑1 (MQ=255)                                                                                                                                                                                                                                              ccaTTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCgcg                      >  2:118113‑M2/1‑93 (MQ=255)                                                                                                                                                                                                                                                          cgcggcggtagttatgccgatattcatcatgcactgattgaggaaggatatacggactgggcggagagtctggttgagtatgcgtggaaaaaatgg          >  2:118113‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                            |                                                                                                      CCGGAGCTGCCAATGTGACTGTTAAAGCCGACACTTCCAATCCGCACGC‑TATAACCCATACTGGCAATTTGCGCGGCATACCCAGCGGTTGCGATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAGGAACC  >  CP009273/1743407‑1743758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.