New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1743657	14 (0.810)	3 (0.180)	3/292	NT	25.6%	coding (160/813 nt)	ydhT	FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex
	?	CP009273	= 1743735	4 (0.240)					coding (82/813 nt)	ydhT	FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex

GCAATTTGCGCGGCATACCCAGCGGTTGCGATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAGGAACCAGCGATACATCACCGCTCCGATACGCCATTCTCGCAGGTCTGCTTGTGTAATGATCATTCGTTAGTGCCGGTGATAGCCATCGACCATGCTTTTAAAGGTTTCGTGTGGCGTACGCCCCGTGGTGCAAAG  >  CP009273/1743470‑1743888                                                                                                                                                                                                                                                                          |                                                                                                                                                          gCAATTTGCGCGGCAGACCCACCGGTTGCCATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCNACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCTGCATAACTACCGCCGCGTGGGa                                                                                                                                                   >  1:232321/1‑274 (MQ=255)                                                                                                                                        gagGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAgg                                                                                                                                        >  2:321491/1‑150 (MQ=255)                                                                                                                                            aaaCTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAGGAAcc                                                                                                                                    <  1:321503/150‑1 (MQ=255)                                                                                                                                                                              ccaTTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCgcg                                                                                                                                                        >  2:118113‑M2/1‑93 (MQ=255)                                                                                                                                                                                                cTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAGGAACCAGCGATACATCACCGCTCCGATACGCCATTCTCGCAGGTCTGCTTGTGTAATGATCATTCGTTAGTGCCGGTGATAGCCATCg                                                 >  2:168508/1‑181 (MQ=255)                                                                                                                                                                                                    aCCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAGGAACCAGCGATACATCACCGCTCCGATACGCCATTCTCGCAGGTCTGCTTGTGTAATGATCATTCGTTAGTGCCGGTGATAGCCATCGACCa                                             <  1:168512/181‑1 (MQ=255)                                                                                                                                                                                                       aGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCgcgtggaaaaaatggctggcggatgaaaacttcgcgcatcaggaagttt                                                                                                          <  2:73751‑M2/117‑50 (MQ=255)                                                                                                                                                                                                           tctcCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATCTCGGCATAACTACCGCCgcgtggaaaaaatggctggcggatgaaaacttcgcgcatcaggaagtttcctctatgcaaaaactggccacagaccccggagagagaccattttgcagtcagtttgcccgcagcgacgatcatgctcgcatcggctgttgtgaggataacgcc  >  1:212102‑M2/1‑64 (MQ=255)                                                                                                                                                                                                           tctcCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCgcgtggaaaaaatggctggcggatgaaaacttcgcgcatcaggaagtttcctc                                                                                                      >  1:73753‑M2/1‑64 (MQ=255)                                                                                                                                                                                                                                                                          |                                                                                                                                                          GCAATTTGCGCGGCATACCCAGCGGTTGCGATTCTGGCGTTATCCTCACAACAGCCGATGCGAGCATGATCGTCGCTGCGGGCAAACTGACTGCAAAATGGTCTCTCTCCGGGGTCTGTGGCCAGTTTTTGCATAGAGGAAACTTCCTGATGCGCGAAGTTTTCATCCGCCAGCCATTTTTTCCACGCATACTCAACCAGACTCTCCGCCCAGTCCGTATATCCTTCCTCAATCAGTGCATGATGAATATCGGCATAACTACCGCCGCGTGGGAAATGGCGCAGGAACCAGCGATACATCACCGCTCCGATACGCCATTCTCGCAGGTCTGCTTGTGTAATGATCATTCGTTAGTGCCGGTGATAGCCATCGACCATGCTTTTAAAGGTTTCGTGTGGCGTACGCCCCGTGGTGCAAAG  >  CP009273/1743470‑1743888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.