New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1837410	11 (0.640)	4 (0.240)	3/294	NT	18.8%	coding (783/1344 nt)	gdhA	glutamate dehydrogenase, NADP‑specific
	?	CP009273	= 1837954	24 (1.430)					coding (1327/1344 nt)	gdhA	glutamate dehydrogenase, NADP‑specific

GTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGGGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCTTATCGAAATCAAAGCCAGCCGCGATGGTCGAGTGGCAGATTACGCCAAAGAATTTGGTCTGGTCTATCTCGAAGGCCAACAGCCGTGGTCTCTACCGGTTGATATCGCCCTGCCTTGCGCCACCCAGAATGAACTGGATGTTGACGCCGCGCATCAGCTTATCGCTAATGGCGTTAAAGCCGTCGCCGAAGGGGCAAATATGCCGAC  >  CP009273/1837153‑1837679                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                              gggggttttAGGGGGGGGATGATGAAAAAGCTCTCCAACATTTCCGCCTGCGTCTTTACCGGTACGGGCCTTTCATTTGGCCGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCAc                                                                                                                                                                                                                                                              <  2:272598/269‑1 (MQ=255)      gtttaggggagggATGATAAGAAAGCTAGCCAACAATTACCACGGGGTCTTCAGCGGTAAGGGCCGTTCATTTGGCGTGAGGCTTATTCGCCCGGGAGCTACCGGCTACGGTCTGGTTTAATTCACAGAAGCAATGCTAAAACGCCACGGTATGGGTTGTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGAGGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCAc                                                                                                                                                                                                                                                              <  2:168859/260‑1 (MQ=255)      attgttGGGGGGGGTGATGAAAAANTTCTCCAACCATACCGCCTGCCTGTTCTCCGGTAAGGGCCTTTGATTTGGCGGCAGTTTTGTTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAg                                                                                                                                                                                                                                                         <  2:192612/270‑1 (MQ=255)                                                 tGCGTCTTCACCGGTAAGGGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTCTCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGCCTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCAAGACAGAGAAACTGGCCAGTCTTAt                                                                                                                                                                                                              >  1:205309/1‑275 (MQ=255)                                                                                                                     tCTGGTTTTTTTCTCAGAATCAGTGCGAAAACGCCACGGTATGGGTTTTGAAGGTATGCGCGTTTCCGTTTCTGTCTCCGGCAACGTCGCTCAGGACGCTATCTAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCTTATCTAAATCAAAGCCAGCCGCGATGGTCGAGTGGCAGATTACGCCAAAGAATTTGGTCTGGTCTATCTCg                                                                                                                                          <  1:160215/275‑1 (MQ=255)                                                                                                                        ggTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGccagcatcgcatcggcaaccttcacaaaaccggcaatgttcgcgccctgcacgtagttggttt                                                                                                                                                                                                                >  1:290794‑M1/1‑139 (MQ=255)                                                                                                                            tATTTCACAGAAGCAATGCTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGccagcatcgcatcggcaaccttcacaaaaccggcaatgttcgcgccctgcacgtagttggtttgctc                                                                                                                                                                                                            <  2:290783‑M1/202‑68 (MQ=255)                                                                                                                                              cTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCtt                                                                                                                                                                                                                >  2:176467/1‑180 (MQ=255)                                                                                                                                                  aaCGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCTTATCg                                                                                                                                                                                                            <  1:176471/180‑1 (MQ=255)                                                                                                                                                                     tGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGaaa                                                                                                                                                                                                                                  >  2:34896/1‑139 (MQ=255)                                                                                                                                                                         gggATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAgaga                                                                                                                                                                                                                              <  1:34896/139‑1 (MQ=255)                                                                                                                                                                               cgcgTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCTTATCGANATCAAAGCAAGCCGCGATGGTGGGGTGCCAGATTACGCAAAAGAATTTGGTCGGGTCAATCTCGAGGGCAAACAGCCGTGTCTTCTCCCGTTTGATATATCCCTGCCTTGCccccccaacaa                                                                                >  1:279781/1‑270 (MQ=255)                                                                                                                                                                                                                                      tGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCTTATCGAAATCAAAGCCAGCCGCGATGGTCGAGTGGCAGATTACGCCAAAGAATTTGGTCTGGTCTATCTCGAAGGCCAACAGCCGTGGTCTCTACCGGTTGATATCGCCCTGCCTTGCGCCACCCAGAATGAACTGGATGTTGACGCCGCGCAGCAGCTTATCGCTACTGGCGATACAGCCGta                         >  1:138802/1‑274 (MQ=255)                                                                                                                                                                                                                                             tGGTGCTCGTGTGATCACTGCGccagcatcgcatcggcaaccttcacaaaaccggcaatgttcgcgccctgcacgtagttggttt                                                                                                                                                                                                                >  2:130858‑M1/1‑22 (MQ=255)                                                                                                                                                                                                                                                 gCTCGTGTGATCACTGCGccagcatcgcatcggcaaccttcacaaaaccggcaatgttcgcgccctgcacgtagttggtttgctc                                                                                                                                                                                                            <  1:130860‑M1/85‑68 (MQ=255)                                                                                                                                                                                                                                                              cTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGTATTCACGAAAGAGAAACTGGCACGTCTTATCGAAATCAAAGCCAGCCGCGATGGTCGAGTGGCAGATTACGCCAAAGAATTTGGTCTGGTCTATCTCGAAGGCCAACAGCCGTGGTCTCTACCGGTTGATATCGCCCTGCCTTGCGCCACCCAGAATGAACTGGATGTTGACGCCGCGCATCAGCTTATCGCTAATGGCGTTAAAGCCGTCGCCGAAGGGGCAAATATGCCGac  <  1:180308/274‑1 (MQ=255)                                                                                                                                                                                                                                                                 cGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCTTATCGAAATCAAAGCCAGCCGCGATGGTCGTGTGGCAGATTACGCCAAAGAATTtggtt                                                                                                                                                      >  2:307254/1‑122 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                              GTCGGCTTTATGGCGGGGATGATGAAAAAGCTCTCCAACAATACCGCCTGCGTCTTCACCGGTAAGGGCCTTTCATTTGGCGGCAGTCTTATTCGCCCGGAAGCTACCGGCTACGGTCTGGTTTATTTCACAGAAGCAATGCTAAAACGCCACGGTATGGGTTTTGAAGGGATGCGCGTTTCCGTTTCTGGCTCCGGCAACGTCGCCCAGTACGCTATCGAAAAAGCGATGGAATTTGGTGCTCGTGTGATCACTGCGTCAGACTCCAGCGGCACTGTAGTTGATGAAAGCGGATTCACGAAAGAGAAACTGGCACGTCTTATCGAAATCAAAGCCAGCCGCGATGGTCGAGTGGCAGATTACGCCAAAGAATTTGGTCTGGTCTATCTCGAAGGCCAACAGCCGTGGTCTCTACCGGTTGATATCGCCCTGCCTTGCGCCACCCAGAATGAACTGGATGTTGACGCCGCGCATCAGCTTATCGCTAATGGCGTTAAAGCCGTCGCCGAAGGGGCAAATATGCCGAC  >  CP009273/1837153‑1837679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.