New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1837410	11 (0.640)	4 (0.240)	3/294	NT	18.8%	coding (783/1344 nt)	gdhA	glutamate dehydrogenase, NADP‑specific
	?	CP009273	= 1837954	24 (1.430)					coding (1327/1344 nt)	gdhA	glutamate dehydrogenase, NADP‑specific

GTTTGCATCACATCATGCTGGATATCCACCATGCCTGTGTTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCGGCAAAATTTCAGGCGTTTATGAGTATTTAACGGATGATGCTCCCCACGGAACATTTCTTATGGGCCAACGGCATT  >  CP009273/1837829‑1838146                                                                                                                              |                                                                                                                                                                                                 gTTTGCATCACATCATGCTGGATATCCACCATGCCTGTGTTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCGGCAAAATTTCAGGCGTTTATGAGTATTTaaa                                              >  1:80109/1‑273 (MQ=255)    tGCATCACATCATGCTGGATATCCACCATGCCTGTGTTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGgcgc                                                                                                                                                            >  2:125439/1‑161 (MQ=255)        tcacatcaTGCTGGATATCCACCATGCCTGTGTTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACg                                                                                                                                                        <  1:125441/161‑1 (MQ=255)        tcacatcaTGCGTGATATCCACCATGTCGGTGTTGGGCATGGGGGTGAAGGTGAGCACACCAACTAGTTGGAGGGGGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCGGCAAAATTTCAGGCGTTTATGAGTATTTAACGGatgatg                                      <  2:80107/275‑1 (MQ=255)                     gATATCCACCATGCCTGTGTTGAGCATGGTGGTGAAGTTGAGCAAACCAACTACGTGCAGGGCGTGAACATTGTCGGTTTTGTGAAGGTTGCCTATGCGTTGCTGGCGCATGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACACATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCTGCAACATTTCAGGCGGTTATGAGTATCTAACGGATGATTCTCCCCACGGacc                         >  2:136789/1‑273 (MQ=255)                     gATATCCACCATGCCTGTGTTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGgcgc                                                                                                                                                            >  2:55226/1‑144 (MQ=255)                         tCCACCATGCCTGTGTTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACg                                                                                                                                                        <  1:55228/144‑1 (MQ=255)                                      tgtTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGAtt                                                                                                                                                                                    >  1:63123/1‑103 (MQ=255)                                       gtTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCTAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCACGGCAAAATTTAAGGCGTTTATGAGTATTTAACGGATGATGCTCCCCACGGAACATTTCTTATGGGCCAACg       <  1:136791/275‑1 (MQ=255)                                          gAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAg                                                                                                                                                                                <  2:63121/103‑1 (MQ=255)                                            gaaagggggggcaGGTGATCAAACAATCTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCGGCAAAATTTCAGGCGTTTATGAGTATTTAACGGATGATGCTCCCCACGGAACATTTCTTATGGGCCAACGGCAtt  <  2:230758/263‑1 (MQ=255)                                                  tggtgAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCGGCAAAATTTCAGGCGTTTATGAGTATTTAACGGATGATGCTc                                   >  2:21336/1‑236 (MQ=255)                                                      gAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCGGCAAAATTTCAGGCGTTTATGAGTATTTAACGGATGATGCTCCCCa                               <  1:21336/236‑1 (MQ=255)                                                            gAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGcgcagtgatcacacgagcaccaaattccatcgctttttcgatagcgtactgggcgacgttgccggagccagaaacggaaacgcgcatcccttcaaaacccataccgtggcgttttagcattgcttctgtgaaata                                                           <  2:290783‑M2/202‑136 (MQ=255)                                                            gAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGcgcagtgatcacacgagc                                                                                                                                                                                <  1:130860‑M2/85‑19 (MQ=255)                                                            gAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGAt                                                                                                                                                                 >  2:75796/1‑100 (MQ=255)                                                            gAGCAAACCAACTACATGCAGGGGGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCNGCAAAATTTCAGGCGTTTATGAGTATTTAACGGATGATGCTCCCCACGGAACATTTCTTATGGGCCAACgg      >  1:230765/1‑255 (MQ=255)                                                              gCAAACCAACTACGTGAAGGGCGCGAACATTGCCGGTTTTGTGTAGTTAGCCGATGCGATGCTGGCGCAGGGTCTGATTCACATTGTAAATGc                                                                                                                                                                      >  1:283589/1‑93 (MQ=255)                                                               cAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTa                                                                                                                 >  2:295526/1‑145 (MQ=255)                                                                aaaCCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGcgcagtgatcacacgagcaccaaattccatcgctttttcgatagcgtactgggcgacgttgccggagccagaaacggaaacgcgcatcccttcaaaacccataccgtggcgttttagcattgcttctgtgaaataaacc                                                       >  1:290794‑M2/1‑63 (MQ=255)                                                                aaaCCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGcgcagtgatcacacgagcacca                                                                                                                                                                            >  2:130858‑M2/1‑63 (MQ=255)                                                                aaaCCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGgcg                                                                                                                                                             <  1:75798/100‑1 (MQ=255)                                                                  aCCAACTACGTGCAGGGCTCTAACATTGCCGGTTTTGTCAAGGTTGCCTATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGa                                                                                                                                                                  <  2:283578/93‑1 (MQ=255)                                                                   ccAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGct                                                                                                             <  1:295537/145‑1 (MQ=255)                                                                                           ttGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATggg                                                                                                                                   >  1:140531/1‑99 (MQ=255)                                                                                               cGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGcaca                                                                                                                               <  2:140528/99‑1 (MQ=255)                                                                                                               gCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAAt                                                                                                                                      >  1:75871/1‑76 (MQ=255)                                                                                                                   atgcgatgcTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGc                                                                                                                                  <  2:75869/76‑1 (MQ=255)                                                                                                                              |                                                                                                                                                                                                 GTTTGCATCACATCATGCTGGATATCCACCATGCCTGTGTTGAGCATGGTGGTGAAGGTGAGCAAACCAACTACGTGCAGGGCGCGAACATTGCCGGTTTTGTGAAGGTTGCCGATGCGATGCTGGCGCAGGGTGTGATTTAAGTTGTAAATGCCTGATGGCGCTACGCTTATCAGGCCTACAAATGGGCACAATTCATTGCAGTTACGCTCTAATGTAGGCCGGGCAAGCGCAGCGCCCCCGGCAAAATTTCAGGCGTTTATGAGTATTTAACGGATGATGCTCCCCACGGAACATTTCTTATGGGCCAACGGCATT  >  CP009273/1837829‑1838146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.