New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2127296 =	7 (0.400)	4 (0.240)	3/292	NT	31.1%	coding (1838/2163 nt)	wzc	colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase
	?	CP009273	2129302 =	11 (0.660)					coding (278/444 nt)	wzb	colanic acid production protein‑tyrosine‑phosphatase; Wzc‑P dephosphorylase

GGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAGCGGCTCAGACTGGTTTCCACTTCTTTCAATGTGTTGACCGCATAACGCGCCACCATTAACGTGGTTCCGACATGACGACCAACAATTGCCGCATCGGTCACTGCCAGAATCGGCGGCGTATCAATCAACACCAGGTCATAGTTTTTACTCGCCCAGTTCACCAGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGATTTGGCGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTAGCAGCGGTAGTAATATCGCCCTGACCAATCAGAATTTCCGACAGGCCATTAACGTTATTAGTGCCCAACAGCTCGTGGGTGTAGCCTTTGCGCATATCGCAGTCGATCAACAACACGCGTTTATTGG  >  CP009273/2127036‑2127473                                                                                                                                                                                                                                                                     |                                                                                                                                                                                  ggAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAGCGGCTCAGACTGGTTTCCACTGCTGTCAATGTGTTGACCGCATAACGCGCCACCATTAACGTGGTTCCGACACGACGACCAACAATTGCCGCATCGGTCACTGCCAGAATCGGCGGCGTATCAATCAACACCAGGTCATAGTTTTTACTCGCCCAGTTCACCAGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGATTTGGCGGCACCTGACcgcgc                                                                                                                                                                     <  1:88103/275‑1 (MQ=255)                                                                                                      gcCACCATTAACGTGGTTCCGACATGACGACCAACAATTGCCGCATCGGTCACTGCCAGAATCGGCGGCGTATCAATCAACACCAGGTCATAGTTTTTACTCGCCCAGTTCACCAGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGATTTGGCGGCACCTGACcgcgcg                                                                                                                                                                    >  2:225469/1‑175 (MQ=255)                                                                                                          ccaTTAACGTGGTTCCGACATGACGACCAACAATTGCCGCATCGGTCACTGCCAGAATCGGCGGCGTATCAATCAACACCAGGTCATAGTTTTTACTCGCCCAGTTCACCAGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGATTTGGCGGCACCTGACCGCGCGGGAt                                                                                                                                                                <  1:225475/175‑1 (MQ=255)                                                                                                                aCGTGGTTCCGACATGACGACCAACAATTGCCGCATCGGTCACTGCCAGAATCGGCGGCGTATCAATCAACACCAGGTCATAGTTTTTACTNGCCCAGTTCACCAGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGATTTGGCGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTAGCAGCGGTAGTAATATCGCCCTGACCAATCAGAATTTCCGACAGGTCATTCCCGTTATTTGTGCCCAACAGCTCg                                                      <  1:229583/275‑1 (MQ=255)                                                                                                                                                                     ggcggcGTATCAATCAACACCAGGTCATATTTTTTACTCGCCCAGTTCACCAGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGTTTTGGCGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTAGCAGCGGTAGTAATATCGCCCTGACCAATCAGAATTTCCGACAGGCCATTAACGTTATTAGTGCCCAACAGCTCGTGGGTGTAGCCTTTGCGCATATCGCAGTCGATCAACAACACGCGTTTATTgg  <  1:162428/274‑1 (MQ=255)                                                                                                                                                                                 ccgtcaaatcagccgccgtctgtgtcgcaactacgacctgattttgaccatggaaaagcgccatatcgaacgcttatgcgagatGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTag                                                                                                                                <  1:288102‑M1/52‑1 (MQ=255)                                                                                                                                                                                  cgtcaaattagccgccgtctgtgtcgcaactacgacctgattttgaccatggaaaagcgccatatcgaacgcttatgcgagatGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATATAGGTCGGTTTag                                                                                                                                <  1:299355‑M1/52‑1 (MQ=255)                                                                                                                                                                                     caaatcagccgccgtctgtgtcgcaactacgacctgattttgaccatggaaaagcgccatatcgaacgcttatgcgagatGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTagcagc                                                                                                                            >  2:288091‑M1/81‑136 (MQ=255)                                                                                                                                                                                      gaattagccgccgtctgagtcgcaactacgtcctgatttttaccatggcaaagggcaatatcgaacgcttatgcgtgatGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTagcagc                                                                                                                            >  2:299344‑M1/80‑135 (MQ=255)                                                                                                                                                                                           ggTCATAGTTTTTACTCGCCCAGTTCACTAGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGATTTGGCGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTAGCAGCGGTAGTAATATCGCCCTGACCAATCAGAATTTCCGACAGGCCATTAACg                                                                           >  1:247987/1‑179 (MQ=255)                                                                                                                                                                                               aTAGTTTTTACTCGCCCAGTTCACCCGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGATTTGGCGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTAGCAGCGGTAGTAATATCGCCCTGACCAATCAGAATTTCCGACAGGCCATTAACGttat                                                                       <  2:247979/179‑1 (MQ=255)                                                                                                                                                                                                                                                                     |                                                                                                                                                                                  GGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAGCGGCTCAGACTGGTTTCCACTTCTTTCAATGTGTTGACCGCATAACGCGCCACCATTAACGTGGTTCCGACATGACGACCAACAATTGCCGCATCGGTCACTGCCAGAATCGGCGGCGTATCAATCAACACCAGGTCATAGTTTTTACTCGCCCAGTTCACCAGTTCGGCAAAGCGTTCGCTCATCAACAGTTCAGAAGGATTTGGCGGCACCTGACCGCGCGGGATCAGGTCAAATTTGGCAATAGAGGTCGGTTTAGCAGCGGTAGTAATATCGCCCTGACCAATCAGAATTTCCGACAGGCCATTAACGTTATTAGTGCCCAACAGCTCGTGGGTGTAGCCTTTGCGCATATCGCAGTCGATCAACAACACGCGTTTATTGG  >  CP009273/2127036‑2127473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.