New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3127021	10 (0.580)	4 (0.240)	3/294	NT	21.8%	coding (296/714 nt)	yghS	putative ATP‑binding protein
	?	CP009273	= 3127787	19 (1.140)					coding (298/693 nt)	yghT	putative ATP‑binding protein

CATCAATGCCAAGACGAATCAACAATACGGGCAAATAAGATGCCATCCATTGGTACAGCTTCAGCTCGCGCTGCCTTAACATTTTTATCCAACCGTTACCGCCCGTGGTTTTTGCCAATTGCGGGCCATCAAAGCGAAACCCCGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAA  >  CP009273/3126779‑3127261                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                 catcaATGCCAAGACGAATCAACAATACGGGCAAATAAGATGCCATCCATTGGTACAGCTTCAGCTCGCGCTGCCTTGACATTTTTATCCAACCGTTACCGCCCGTGGTTTTTGCCAATTGCGGGCCATCAAAGCGAAACCCCGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCa                                                                                                                                                                                                                                      <  1:175063/255‑1 (MQ=255)                                                                                    tttATCCAACCGTTACCGCCCGTGGTTTTTGCCAATTGCGGGCCATCAAAGCGAAACCCCGGCACTTCAACCTGCGGGTCGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCACGCCAACAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCACTTTACTTCGGAGAGAACGCCCACAAGGTGCGCCCATAACAGGGAGCtag                                                                                                                                 >  2:103144/1‑271 (MQ=255)                                                                                    tttATCCAACCGTTACCGCCCGTGGTTTTTGCCAATTGCGGGCCATCAAAGCGAAACCCCGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGca                                                                                                                                                                                            >  2:135478/1‑214 (MQ=255)                                                                                        tCCAACCGTTACCGCCCGTGGTTTTTGCCAATTGCGGGCCATCAAAGCGAAACCCCGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACAtg                                                                                                                                                                                        <  1:135480/214‑1 (MQ=255)                                                                                                                                           aCCCCGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCCTTTACACAACATTTTGCGACACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGGAATATTGCGAGGCGGTGTTGAGGGCTTTTCGTGTACATGTGCCGCTTTACTTCGCAGATAACGCCCAACAGGTGCGCCAATAACAGGGGACTGTGACATCCATTCCCCAATGCGCCCGTCAGACTGCCCGAGATACCTTTGTTCTgctc                                                                          >  2:72525/1‑270 (MQ=255)                                                                                                                                                       cAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAAACCATTCGCCAATTCGCCCGGACGAATGCCCGAGATAAATGTGTTCTGTTAGCATCTTTGCTGcc                                                            >  1:214347/1‑275 (MQ=255)                                                                                                                                                                       gtcggtGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGcc                                                                                               <  1:161168/224‑1 (MQ=255)                                                                                                                                                                       gtcggtGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCA                                                                                                                                                                                                                                                  <  2:287013‑M1/77‑1 (MQ=255)                                                                                                                                                                            tgatgaTCAGAAAGCCTTGCTGGCTTTTACACCACCTTTTTCGAAACTTGTACGCCCGCCAGCAGGAAAGCAtatgacgaaagcgcattaagcgacgggcgacaaacgctgtaattaccagcgccggaactggtccaggcaatttttttgctgttttcacctgatttcgttcaattgttttatgtaaggattttcccatcaacggtaattttgtcactgcacgaccgacatttccggcctgttttcctaaatgaactctttcggcagcaccata                                        <  2:310981‑M1/274‑203 (MQ=255)                                                                                                                                                                                      aaaGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAtatgacgaaagcgcagtaagcgacgggcgacaaacgctgtaattaccagcgccggaactggtccaggcaatttttttgctgtttacacctgatttcnttcaattgttttatgtaaggattttcccatcaacggtaattttgtcactgcacgaccgacatttccggcctgttttcctaaatgaactctttcggcagcac                                            >  1:310992‑M1/1‑62 (MQ=255)                                                                                                                                                                                      aaaGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAtatgacgaaagcgcagtaagcgacgggcgaca                                                                                                                                                                                                                  >  1:193127‑M1/1‑62 (MQ=255)                                                                                                                                                                                        ggatttGGTGGCTTTGAAAAAAATTGTTGCGAACCTTTTGCGCCGANCAGCAGGAAAGCAGATTGATAACCAGTGCAGTAATATTGCCAGGCTGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGAt                           <  2:214341/271‑1 (MQ=255)                                                                                                                                                                                          ccTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAtatgacgaaagcgcagtaagcgacgggcgacaaacg                                                                                                                                                                                                              <  2:193123‑M1/94‑37 (MQ=255)                                                                                                                                                                                                         cacaACATTTTGCGAAACGTGGACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTCTNGTCCACATGTGCCGCTTTACTTCGCAGCTAACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATcaca          <  1:259179/275‑1 (MQ=255)                                                                                                                                                                                                                 tttGCGAAACTTGTAAGCCCGGCAGCAGGCAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCNAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTTCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACaa  >  1:233790/1‑275 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                 CATCAATGCCAAGACGAATCAACAATACGGGCAAATAAGATGCCATCCATTGGTACAGCTTCAGCTCGCGCTGCCTTAACATTTTTATCCAACCGTTACCGCCCGTGGTTTTTGCCAATTGCGGGCCATCAAAGCGAAACCCCGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAA  >  CP009273/3126779‑3127261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.