New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3127021	10 (0.580)	4 (0.240)	3/294	NT	21.8%	coding (296/714 nt)	yghS	putative ATP‑binding protein
	?	CP009273	= 3127787	19 (1.140)					coding (298/693 nt)	yghT	putative ATP‑binding protein

AGCGATGGTTCAGGCAAGTCAACGGTGTGTGAACATCTTATTACCGTTGTCGAAAAATATGGTGCTGCCGAAAGAGTTCATTTAGGAAAACAGGCCGGAAATGTCGGTCGTGCAGTGACAAAATTACCGTTGATGGGAAAATCCTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACGTAAACCCGACCATAAACGGGAATCGCTGGCGAGGAAGATTGCCATAACGCC  >  CP009273/3127529‑3128061                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                   aGCGATGGTTCAGGCAAGTCAACGGTGTGTGAACATCTTATTACCGTTGTCGAAAAATATGGTGCTGCCGAAAGAGTTCATTTAGGAAAACAGGCCGGAAATGTCGGTCGTGCAGTGACAAAATTACCGTTGATGGGAAAATCCTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTCCTGCGCTTTCGTGATATGATTGCCTgttgtcg                                                                                                                                                                                                                                                                    >  2:111554/1‑275 (MQ=255)         ttCAGGCAAGTCAACGGTGTGTGAACATCTTATTACCGTTGTCGAAAAATATGGTGCTGCCGAAAGAGTTCATTTAGGAAAACAGGCCGGAAATGTCGGTCGTGCAGTGACAAAATTACCGTTGATGGGAAAATCCTTACATAAAACAATTGAACGAAATCAGGTGAAAAAAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTAAAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTGGTCGCGGGt                                                                                                                                                                                                                                                            >  1:204889/1‑275 (MQ=255)                  gtaaccGGTCTTTGAAAATATGATTCCCGTTGTCGAAAAATATGGNGCTGCCGAAAGAGTTCATTTAGTAAAACAGGCCGCAAATGTCGGTCGTGCAGTGACAAAATTACCGTTGATGGGAAAATCCTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCTTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTTGTCGCGGGTTAATTGtt                                                                                                                                                                                                                                                    <  2:204883/269‑1 (MQ=255)                                     cttacacccGTTGTGAAAAAAGTTGGCGATGCCGAAAAGGTTCAGTTAGAAAAACAGGCGGGAAATGTCGGGCTTACAGTGACAAAATTACCGTTGATAGGAAAAACCTTACATAAAACAATAGAACGAAATCAGGTAAAAACAGCAAAAAAATGGCCTGGACTAGTTCCGGTGCGGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCa                                                                                                                                                                                                                                <  2:290792/268‑1 (MQ=255)                                               ttGTCGAAAAATATGGTGCTGCCGACAGAGTTCATTTAGGAAAACAGGCCGGAAATGTCGGTCGTGCAGTGACAAAATTACCGTTGATGGGAAAATCCTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGGCATATGCTTGCCTGTCGTCGTCGCGGGTTAATGGTTCTACTCGACCGTTATCCTCAGGACCgaact                                                                                                                                                                                                                      >  2:106016/1‑273 (MQ=255)                                                          tatGGTGCTGCCGAAAGAGTTCATTTAGGAAAACAGGCCGGAAATGTCGGTCGTGCAGTGACAAAATTACCGTTGATGGGAAAATCCTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTAATGCGCTTTCGTCATAtgctttcctgctggcgggcgtacaagtttcgaaaaaggtggtgtaaaagccagcaaggctttctgatcatca                                                                                                                                                                                                            <  2:310981‑M2/274‑73 (MQ=255)                                                              gTGCTGCCGAAAGAGTTCATTTAGGAAAACAGGCCGGAAATGTCGGTCGTGCAGTGACAAAATTACCGTTGATGGGAAAATCCTTACATAAAACAATTGAANGAAATCAGGTGTAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATAtgctttcctgctggcgggcgtacaagtttcgcaaaatgttgtgtaaaagccagcaaggcttt                                                                                                                                                                                                                      >  1:310992‑M2/1‑198 (MQ=255)                                                                                                                                                             aTTGAACGAAATCAGGTTAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATaa                                                                                                        <  1:111556/275‑1 (MQ=255)                                                                                                                                                              ttGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCATGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTaa                                                                                                                                                                                                                                                >  2:244484/1‑138 (MQ=255)                                                                                                                                                                  aCGAAATCAGGTGAAAACAGCAAAAAAATTGCATGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAaccga                                                                                                                                                                                                                                            <  1:244492/138‑1 (MQ=255)                                                                                                                                                                             tGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGtcatc                                                                                        <  1:182064/275‑1 (MQ=255)                                                                                                                                                                                              ttGCCTGCACCCGTTCCGGCGCTGGTTATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGAcc                                                                        <  1:106018/274‑1 (MQ=255)                                                                                                                                                                                                     gACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTTGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTGGACCTTGAAg                                                                  <  1:333087/273‑1 (MQ=255)                                                                                                                                                                                                                                cGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATAtgctttcctgctggcgggcgtacaagtttcgcaaaatgttgtgtaaaagccagcaagg                                                                                                                                                                                                                          <  2:193123‑M2/94‑59 (MQ=255)                                                                                                                                                                                                                                cGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTc                                                                                                                                                                                                                     >  2:46886/1‑99 (MQ=255)                                                                                                                                                                                                                                cGTTTGTCGCCCGTCGCTTACTGCGCTTACGTCATATGCTTGCCGGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTCCGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGNGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCCAACTCAATGTTTACCTTGAAGTTGCCTGTGCACGTAAACCCGACAATaa                                      >  1:247737/1‑274 (MQ=255)                                                                                                                                                                                                                                cGTTTGTCGCCCGTCGCTTACTGCACTTATGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACTGAAAGNGTTTCACTGGATGGCGCGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTTACCTTGAAGGTGCCTGTGCACGTAAACCCGACCATaaa                                     >  1:228073/1‑275 (MQ=255)                                                                                                                                                                                                                                    tGTCGCCCGTCGCTTACTGCGCTTTCGTCATAtgctttcctgctggcgggcgtacaagtttcgcaaaatgttgtgtaaaagccagcaaggcttt                                                                                                                                                                                                                      >  1:193127‑M2/1‑32 (MQ=255)                                                                                                                                                                                                                                    tGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTgg                                                                                                                                                                                                                 <  1:46887/99‑1 (MQ=255)                                                                                                                                                                                                                                                       cgcTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTccc                                                                                                                                                                                         >  2:122672/1‑104 (MQ=255)                                                                                                                                                                                                                                                           ttCGTCATATGCTTGCCTGTCGTCGTCGTGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGTTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAATCGTTTCAGTGGATGGCGAGCCATAAGCNTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACTTAAACCCGACCATAAACGGGAATCGCTGGCGAGGAAGATTGc           >  1:260043/1‑274 (MQ=255)                                                                                                                                                                                                                                                           ttCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCt                                                                                                                                                                                     <  1:122674/104‑1 (MQ=255)                                                                                                                                                                                                                                                           ttCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACGTAAAcc                                               <  1:163748/238‑1 (MQ=255)                                                                                                                                                                                                                                                                   atGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTNCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACGTAAAGCCGACCATAAACGGGAATAGCTGGCGAGGAAGATTGCAAAAACGcc  >  1:283815/1‑275 (MQ=255)                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                   AGCGATGGTTCAGGCAAGTCAACGGTGTGTGAACATCTTATTACCGTTGTCGAAAAATATGGTGCTGCCGAAAGAGTTCATTTAGGAAAACAGGCCGGAAATGTCGGTCGTGCAGTGACAAAATTACCGTTGATGGGAAAATCCTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAACCGACCGTTATCCTCAGGACCAAATTCCTGGCGCTTACGATGGTACGGTGTTCCCACCTAACGTTGAAGGTGGTCGTTTTGTCTCATGGCTGGCAAGCCAGGAACGTAAAGCGTTTCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACGTAAACCCGACCATAAACGGGAATCGCTGGCGAGGAAGATTGCCATAACGCC  >  CP009273/3127529‑3128061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.