New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3283074 =	11 (0.640)	4 (0.250)	3/282	NT	27.4%	coding (902/2517 nt)	yraJ	putative outer membrane protein
	?	CP009273	3283194 =	11 (0.690)					coding (1022/2517 nt)	yraJ	putative outer membrane protein

GGCCCCTGGCGATTACGCAACTATTCCACATGGACACGCAACGATCAGACATCAAGCTGGAATACCATCAGTAGTTATTTACAACGTGATATCAAGGCGTTGAAGTCTCAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATG  >  CP009273/3282818‑3283249                                                                                                                                                                                                                                                                 |                                                                                                                                                                                ggCCCCTGGCGATTACGCAACTATTCCACATGGACACGCAACGATCAGACATCAAGCTGGAATACCATCAGTAGTTATTTACAACGTGATATCAAGGCGTTGAAGTCTCAGTTGCTTCTTGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTGCTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCa                                                                                                                                                               <  1:74866/275‑1 (MQ=255)       tGGCGATTACGCAACTATTCCACATGGACACGCAACGATCAGACATCAAGCTGGAATACCATCAGTAGTTATTTACAACGTGATATCAAGGCGTTGAAGTCTCAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCAAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTCTCGCCAACATGAGTGCCATCGTGACTACCAGGCAAAATgg                                                                                                                                                         >  2:3758/1‑275 (MQ=255)                                     cGCAACGATCAGACATCAAGCTGGAATACCATCAGTAGTTATTTACAACGTGATATCAAGGCGTTGAAGTCTCAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGAAGTGAAATCGTGACTATCAGGCAAAATGGGTATGTGATCTATCAAAGNAACgttacaga                                                                                                                           >  2:27712/1‑269 (MQ=255)                                                                        cgtaaaagtattattcaaaccatatattgccatggcttcagcaaattcgggttccttgctatcactgtttgcatcagcgcgatagcgtccagcggtcgcgctatactttagatgcccaggtcgctgcattatgggtattgaagaataaggctggatcaagcgacgttgtgtactgtcactttcttc                                                                                                                                                                                 <  2:111414‑M1/1‑1 (MQ=255)                                                                            aaagtattattcaaaccatatattgccgtggcttcagcaaattcgggttccttgctatcactgtttgcatcagcgcgatagcgtccagcggtcgcgctatactttagatgcccaggtcgctgcatcatgggtaatgaagaataaggctggataaagcgacgttgtgtaccgtcactttcttCAATc                                                                                                                                                                             >  1:111416‑M1/182‑186 (MQ=255)                                                                                          accatatattgccgtggcttcagcaaattcgggttccttgctatcactgtttgcatcagcgcgatagcgtccagcggtcgcgctatactttagatgcccaggtcgctgcatcatgggtaatgaagaataaggctggataaagcgacgttgtgtaccgtcactttcttCaa                                                                                                                                                                               <  2:218326‑M1/3‑1 (MQ=255)                                                                                            catatattgccgtggcttcagcaaattcgggttccttgctatcactgtttgcatcagcgcgatagcgtccagcggtcgcgctatactttagatgcccaggtcgctgcatcatgggtaatgaagaataaggctggataaagcgacgttgtgtaccgtcactttcttCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGCTCTCTAcccctcttccaacaacctttatttata                                                                     <  2:256523‑M1/109‑14 (MQ=255)                                                                                              tatattgccgtggcttcagcaaattcgggttccttgctatcactgtttgcatcagcgcgatagcgtccagcggtcgcgctatactttagatgcccaggtcgctgcatcatgggtaatgaagaataaggctggataaagcgacgttgtgtaccgtcactttcttCAATCGt                                                                                                                                                                           >  1:218332‑M1/164‑170 (MQ=255)                                                                                              aaGGCGTTGAAGTCTTAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGt                                                                  <  1:3758/275‑1 (MQ=255)                                                                                                tattgccttggcttcagcaaattcgggttccttgctatcactgtttgcatcagcgcgatagcgtccagcggtcgcgcnatactttagatgcccaggtagctgcatcatgggtaatgaagaataaggctggataaagcgacgttgtgtaccgtcactttcttCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTTACGATCTCTACCCCTCTTCCAACAgcgg                                                                              >  1:256531‑M1/162‑261 (MQ=255)                                                                                                              aGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAg                                                   <  1:27712/274‑1 (MQ=255)                                                                                                                                                     tttCCAGCTCCACCTGTTCTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCATCGCGGACTTGCCCCAACCGTACGCGGTAGCGCAAACAGTCGTGCACGCTTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCCACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCa           <  1:29227/275‑1 (MQ=255)                                                                                                                                                              ccacCCTTACTGTCGGGCAACTCCCTTCCGACGATAATATGTTGCCAACCAGCCAGCGCGGAGTTGCCACAACGGTAAGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCatg  <  2:4876/274‑1 (MQ=255)                                                                                                                                                                  agcggtcgcgctatactttagatgcccaggtcgctgcatcatgggtaatgaagaataaggctggataaagcgacgttgtgtaccgtcactttcttCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACa                                                                                  <  1:180677‑M1/96‑1 (MQ=255)                                                                                                                                                                    ttACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTAcc      >  1:4876/1‑265 (MQ=255)                                                                                                                                                                      gtcgcgctatactttagatgcccaggtcgctgcatcatgggtaatgaagaataaggctggataaagcgacgttgtgtaccgtcactttcttCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAgcgg                                                                              >  2:180673‑M1/92‑191 (MQ=255)                                                                                                                                                                                                                                ccccAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCt                                                                                                                   >  2:90290/1‑96 (MQ=255)                                                                                                                                                                                                                                    aaCGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGa                                                                                                               <  1:90292/96‑1 (MQ=255)                                                                                                                                                                                                                                                          agtagtGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAAt                                                                                                            >  2:185403/1‑77 (MQ=255)                                                                                                                                                                                                                                                              gtGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAAc                                                                                                        <  1:185407/77‑1 (MQ=255)                                                                                                                                                                                                                                                                 |                                                                                                                                                                                GGCCCCTGGCGATTACGCAACTATTCCACATGGACACGCAACGATCAGACATCAAGCTGGAATACCATCAGTAGTTATTTACAACGTGATATCAAGGCGTTGAAGTCTCAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATG  >  CP009273/3282818‑3283249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.