New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3283074 =	11 (0.640)	4 (0.250)	3/282	NT	27.4%	coding (902/2517 nt)	yraJ	putative outer membrane protein
	?	CP009273	3283194 =	11 (0.690)					coding (1022/2517 nt)	yraJ	putative outer membrane protein

AGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGA  >  CP009273/3282927‑3283424                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                       aGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAg                                                                                                                                                                                                                                  <  1:27712/274‑1 (MQ=255)                                        tttCCAGCTCCACCTGTTCTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCATCGCGGACTTGCCCCAACCGTACGCGGTAGCGCAAACAGTCGTGCACGCTTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCCACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCa                                                                                                                                                                                          <  1:29227/275‑1 (MQ=255)                                                 ccacCCTTACTGTCGGGCAACTCCCTTCCGACGATAATATGTTGCCAACCAGCCAGCGCGGAGTTGCCACAACGGTAAGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCatg                                                                                                                                                                                 <  2:4876/274‑1 (MQ=255)                                                       ttACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTAcc                                                                                                                                                                                     >  1:4876/1‑265 (MQ=255)                                                                                                                                                               tataaataaaggttgttggaagaggggtagagagcgttaatttcaaaggcacccgctgacacgttgctttgatagatcacataaccattttgcctgatagtcacgattgAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATg                                                                    <  2:256523‑M2/165‑1 (MQ=255)                                                                                                                                                                        ccgctgttggaagaggggtagagatcgttaatttcaaaggcacccgctgacacgttgctttgatagatcacataaccattttgcctgatagtcacgattgAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGAc                                                                                                                                              >  2:180673‑M2/101‑191 (MQ=255)                                                                                                                                                                        ccgctgttggaagaggggtagagatcgtaaatttcaaaggcacccgctgacacgttgctttgatagatcacataaccattttgcctgatagtcacgattgAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCTACCTGGGCATCTAAAGTATNGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCAAGGCAata                                                                        >  1:256531‑M2/101‑261 (MQ=255)                                                                                                                                                                            tgttggaagaggggtagagatcgttaatttcaaaggcacccgctgacacgttgctttgatagatcacataaccattttgcctgatagtcacgattgAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCt                                                                                                                                          <  1:180677‑M2/95‑1 (MQ=255)                                                                                                                                                                                  tgATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACtttt                                                   >  1:116308/1‑272 (MQ=255)                                                                                                                                                                                       tATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTAttctt                                                                                                                                                                                            >  1:4295/1‑130 (MQ=255)                                                                                                                                                                                           aaaGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCAtt                                                                                                                                                                                        <  2:4295/130‑1 (MQ=255)                                                                                                                                                                                                          cGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCt                        <  2:116306/275‑1 (MQ=255)                                                                                                                                                                                                                                tctcTACCCCCCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCTACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGa  >  1:330373/1‑275 (MQ=255)                                                                                                                                                                                                                                           ctTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGAc                                                                                                                                                                       >  2:284989/1‑99 (MQ=255)                                                                                                                                                                                                                                               cAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTgg                                                                                                                                                                   <  1:285000/99‑1 (MQ=255)                                                                                                                                                                                                                                                                     acgattgAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAatata                                                                      >  1:218332‑M2/8‑170 (MQ=255)                                                                                                                                                                                                                                                                       gattgAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACttt                                                    >  1:111416‑M2/6‑186 (MQ=255)                                                                                                                                                                                                                                                                         ttgAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGt                                                                  <  2:218326‑M2/167‑1 (MQ=255)                                                                                                                                                                                                                                                                           gAAGAAAGTGACAGTACACAACGTCGCTTGATCCAGCCTTATTCTTCAATACCCATAATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCATGGCAATATATGGTTTGAATAATACTTTTACg                                                <  2:111414‑M2/185‑1 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                       AGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAGCTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTACGCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGTCAGCGGGTGCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACACAACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAGTATAGCGCGACCGCTGGACGCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACTTTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGA  >  CP009273/3282927‑3283424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.