New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3528874	23 (1.330)	3 (0.190)	3/284	NT	10.4%	coding (354/1353 nt)	envZ	sensory histidine kinase in two‑component regulatory system with OmpR
	?	CP009273	= 3528992	30 (1.860)					coding (236/1353 nt)	envZ	sensory histidine kinase in two‑component regulatory system with OmpR

GGCGGCGGAATAATCCCTTTACCAACCTGCAAGGCTGCGTGTTCGAGATCGACCAACGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGT  >  CP009273/3528617‑3529140                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           ggcggcggAAGAATCCCTTGACCAACCTGCAAGGCGGCGTGTTCGAGATCGACCAACGGTCGGTTCTGGAGACGAATAAACAGCCACGNCCCGCCTAGCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGTGCACTTACGTCGGGCCGCCCAGTtgctg                                                                                                                                                                                                                                                              <  1:234845/272‑1 (MQ=255)  gcggcggAATAATCCCTTTACCAACCTGCAAGGCTGCGTGTTCGAGATCGACCAACGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCNGCGTATAGCGGCACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGcc                                                                                                                                                                                                                                                          <  1:311283/275‑1 (MQ=255)                 cTTTCCCAACCTGCAAGGCTGCTTGTTCGAGATCGACCAACGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTaa                                                                                                                                                                                                                                            <  1:3376/274‑1 (MQ=255)                   ttACCAACCTGCAATGCTGCGTGTTCGAGATCGACCAACGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTACCGCCAATAGCATAAGCGCCAGCGTACAGCGGAACAGCGGGGCGAAATCGCCCTGATGACTCTCGCTCAGCGGTCCGCGGACCCAGCTATTGGGCCACAGCCAGGGTTTCAGCCAGCAGACAGGCCAACTTTTGGTGACCTAAACGCGCCCTCCCTGCGGGCCGCCCAGTTGCTGCTCCCCCTGATGGCCTna                                                                                                                                                                                                                                            >  2:158/1‑272 (MQ=255)                                   cTGCGTGTTCGAGATCGACCAACGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGCACTTTTGTTGACCTCAACGCGCACGTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGcc                                                                                                                                                                                                                         <  2:92221/275‑1 (MQ=255)                                          ttCGAGCTCGACCAACGGTCGGTTCTGGAGACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGgc                                                                                                                                                                                                                                                                           <  2:72320/218‑1 (MQ=255)                                                        aCGGTCGGTTCTTGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTgcgc                                                                                                                                                                                                                                                           <  2:191450/220‑1 (MQ=255)                                                                       tACGAATCAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAg                                                                                                                                                                                     <  1:143974/275‑1 (MQ=255)                                                                          gAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGGTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATgg                                                                                                                                                                                                                                                 >  2:78508/1‑212 (MQ=255)                                                                              aaaCAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTa                                                                                                                                                                                                                                             <  1:78510/212‑1 (MQ=255)                                                                               aaCAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGGCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTagagaga                                                                                                                                                                             >  1:64131/1‑275 (MQ=255)                                                                                             gCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGTGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGagatctaccgtgagctggggatctctctctactccaacgaggctgccgaagaggcaggtctgcgttgggcgcaacactatgaattcttaagccatcagatggcgcagca                                                                                                                                                               <  1:186683‑M1/275‑110 (MQ=255)                                                                                                                                  aaCAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTACATCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGCATTCATAGTGTTGCGCACACCGCAGACCTGCCTCTTCTGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGAAAGCAcaacca                                                                                                                           >  1:46361/1‑274 (MQ=255)                                                                                                                                  aaCAGCGCAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAAtt                                                                                                                                                                                                                                       >  2:36144/1‑166 (MQ=255)                                                                                                                                      gcgcAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATa                                                                                                                                                                                                                                   <  1:36144/166‑1 (MQ=255)                                                                                                                                          agagaAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCCGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGACACAACCAACTGCGTGc                                                                                                                  >  1:99170/1‑275 (MQ=255)                                                                                                                                                                                              ggCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCtt                                                                                                                                                                                                                                              >  2:260020/1‑99 (MQ=255)                                                                                                                                                                                                  aCAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCAAGTTGCTGCGCCATCTGATGGCTTAAGa                                                                                                                                                                                                                                          <  1:260028/99‑1 (MQ=255)                                                                                                                                                                                                                aGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGagatctaccgtgagctggggatctctctctactccaacga                                                                                                                                                                                                                                    >  1:3714‑M1/1‑51 (MQ=255)                                                                                                                                                                                                                    aGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGagatctaccgtgagctggggatctctctctactccaacgaggct                                                                                                                                                                                                                                <  2:3714‑M1/91‑45 (MQ=255)                                                                                                                                                                                                                    aGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGc                                                                                                                                                                                                                                                >  2:30198/1‑75 (MQ=255)                                                                                                                                                                                                                        gacAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTaa                                                                                                                                                                                                                                            <  1:30198/75‑1 (MQ=255)                                                                                                                                                                                                                                   ttttGGTGACCTCAACGCGCTCTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATcgcg                         <  1:10566/275‑1 (MQ=255)                                                                                                                                                                                                                                               cAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGCGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTc                                                                                            >  2:125745/1‑196 (MQ=255)                                                                                                                                                                                                                                               aagcgcgcccggccGTCGGGCCGCCCAGTCGCTGCGCCATCTAATGTCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTGCGGCAGCCGCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATTTCCCGGCGGAAAGCGGGAGCCACAACCAACTGCGTGCCGTCTTCCAGTTGCTGTTTGTCTGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGcac              <  2:46360/262‑1 (MQ=255)                                                                                                                                                                                                                                                   gcgcACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGtc                                                                                        <  1:125747/196‑1 (MQ=255)                                                                                                                                                                                                                                                          tCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCGCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTGAGTACGCGAGGACTTTATTAAACTGCTGGAGGCCAGGCAAAAACGCGAAGGTCAGCACCACCAGAAAAgg  >  1:51980/1‑274 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                           GGCGGCGGAATAATCCCTTTACCAACCTGCAAGGCTGCGTGTTCGAGATCGACCAACGGTCGGTTCTGGATACGAATAAACAGCCACGCCCCGCCTATCGCCAATAGCATAATCGCCAGCGTATAGCGGAACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGT  >  CP009273/3528617‑3529140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.