New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3528874	23 (1.330)	3 (0.190)	3/284	NT	10.4%	coding (354/1353 nt)	envZ	sensory histidine kinase in two‑component regulatory system with OmpR
	?	CP009273	= 3528992	30 (1.860)					coding (236/1353 nt)	envZ	sensory histidine kinase in two‑component regulatory system with OmpR

AACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAAGA  >  CP009273/3528746‑3529252                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                     aaCAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTACATCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGCATTCATAGTGTTGCGCACACCGCAGACCTGCCTCTTCTGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGAAAGCAcaacca                                                                                                                                                                                                                                           >  1:46361/1‑274 (MQ=255)         agagaAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCCGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGACACAACCAACTGCGTGc                                                                                                                                                                                                                                  >  1:99170/1‑275 (MQ=255)                                                                                                  ttttGGTGACCTCAACGCGCTCTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATcgcg                                                                                                                                         <  1:10566/275‑1 (MQ=255)                                                                                                              cAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGCGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTc                                                                                                                                                                                                            >  2:125745/1‑196 (MQ=255)                                                                                                              aagcgcgcccggccGTCGGGCCGCCCAGTCGCTGCGCCATCTAATGTCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTGCGGCAGCCGCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATTTCCCGGCGGAAAGCGGGAGCCACAACCAACTGCGTGCCGTCTTCCAGTTGCTGTTTGTCTGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGcac                                                                                                                              <  2:46360/262‑1 (MQ=255)                                                                                                                  gcgcACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGtc                                                                                                                                                                                                        <  1:125747/196‑1 (MQ=255)                                                                                                                         tCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCGCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTGAGTACGCGAGGACTTTATTAAACTGCTGGAGGCCAGGCAAAAACGCGAAGGTCAGCACCACCAGAAAAgg                                                                                                                  >  1:51980/1‑274 (MQ=255)                                                                                                                                    gccCCGTGGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAgg                                                                                                        <  1:158/274‑1 (MQ=255)                                                                                                                                           tgctgcGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTcccgacggaagtgcgcgttgaggtcaacaaaagttcgcctgtcgtctggctgaaaacctggctgtcgcacaatatctgggtacgcgtgccgctgaccgaaattcatcagggcgatttctctccgctgttccgctatacgctggcgattatgctattggcgataggc                                                                                                <  1:186683‑M2/275‑167 (MQ=255)                                                                                                                                                cgcCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCAAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGTCACAAACAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAGCa                                                                                           <  1:299958/275‑1 (MQ=255)                                                                                                                                                               tAAGAATTCATAGTGTTGCGCGCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCGGCTCACGGTAGATCTCCAGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCATCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTGCGTACGCCAGTACTTTATTAAACTGCTGGAGGCTCGGCAAAATCTCAACGTGCAGCACCACCAGATAAGACGAAACCAAGCTAGCGACAAGCANCACGACGATGAGCa                                                                            >  2:249190/1‑275 (MQ=255)                                                                                                                                                                                gcgcCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCaccacc                                                                                                                          >  2:255163/1‑212 (MQ=255)                                                                                                                                                                                    ccAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATACCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGAt                                                                                                                      <  1:255171/212‑1 (MQ=255)                                                                                                                                                                                                  ccTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTAcgcg                                                                                                                                                                                >  1:81094/1‑140 (MQ=255)                                                                                                                                                                                                      ttCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGa                                                                                                                                                                            <  2:81092/140‑1 (MQ=255)                                                                                                                                                                                                       tCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGGACTTCGTAcgcg                                                                                                                                                                                >  2:118203/1‑135 (MQ=255)                                                                                                                                                                                                           cAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGGACTTCGTACGCGAGGa                                                                                                                                                                            <  1:118205/135‑1 (MQ=255)                                                                                                                                                                                                            aGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTcccgacggaagtgcgcgttgaggtcaacaaaagttcgcctgtcgtct                                                                                                                                                                                                                       <  2:3714‑M2/91‑48 (MQ=255)                                                                                                                                                                                                                tCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTcccgacggaagtgcgcgttgaggtcaacaaaagttcgcctgtcgtctggct                                                                                                                                                                                                                   >  1:3714‑M2/1‑40 (MQ=255)                                                                                                                                                                                                                  gTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTAcgcg                                                                                                                                                                                >  2:320464/1‑124 (MQ=255)                                                                                                                                                                                                                      gAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGa                                                                                                                                                                            <  1:320476/124‑1 (MQ=255)                                                                                                                                                                                                                          agaaagagTTGCCCAGTTCACGGTAGATATCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGNCATCAACATACGCACTTCCTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCGCCAGATAAGTCGTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCTAATGAACTTCGTGGCTAGAAGCGCAATCGCCTCATGCTTTagag                  <  1:249198/274‑1 (MQ=255)                                                                                                                                                                                                                                agaTCCCCAGCTCACGGGAGATCTCCCGAGGGAAAGCGGGAGGCACAACCAACTGCGCGCCGTCCTCCAGTCGCAGTTTGTCGGTCATCAACATACGCACTTCGGACGCGAGGGCTGTAGTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGAACCACCAGATAAGTCATCACCAGGCTGTCGAACAGCAAGGTGACGATGAGCAAAAACGAACGCGCAAAGGAAATTAGCTGGAAGAAGGACAAACGCCACATGCtgtcagaccgcca            >  2:292288/1‑262 (MQ=255)                                                                                                                                                                                                                                 gaTCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGa                                                                                                 >  2:19204/1‑188 (MQ=255)                                                                                                                                                                                                                                  aTCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACg                                                                      >  1:166065/1‑214 (MQ=255)                                                                                                                                                                                                                                     cccAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAg                                                                                             <  1:19204/188‑1 (MQ=255)                                                                                                                                                                                                                                     cccAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAGCAAGGGGACGATGAGCAATAACGAACGGGCAAATGAACTTCGTGGCGAGAAGCGCCATCGCCTCATGCTTTAGAAcctggatctta       >  2:316222/1‑265 (MQ=255)                                                                                                                                                                                                                                     cccAGCTAACGGTATATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAg                                                                                             <  1:193533/188‑1 (MQ=255)                                                                                                                                                                                                                                         gCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTGCGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCATTAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCa                            <  1:316233/249‑1 (MQ=255)                                                                                                                                                                                                                                          cTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTAcgcg                                                                                                                                                                                >  1:297835/1‑100 (MQ=255)                                                                                                                                                                                                                                          cTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTAAGGGCAAAAGAACTTCGGGGCGAGAAGCGCAATCGCACCAGGCTTTAGAGCCggtctcttatacac  >  2:328752/1‑261 (MQ=255)                                                                                                                                                                                                                                              cGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGa                                                                                                                                                                            <  2:297824/100‑1 (MQ=255)                                                                                                                                                                                                                                              cGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCa                            <  1:328764/244‑1 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                     AACAGCGGAGAGAAATCGCCCTGATGAATTTCGGTCAGCGGCACGCGTACCCAGATATTGGGCGACAGCCAGGTTTTCAGCCAGACGACAGGCGAACTTTTGTTGACCTCAACGCGCACTTCCGTCGGGCCGCCCAGTTGCTGCGCCATCTGATGGCTTAAGAATTCATAGTGTTGCGCCCAACGCAGACCTGCCTCTTCGGCAGCCTCGTTGGAGTAGAGAGAGATCCCCAGCTCACGGTAGATCTCCCGACGGAAAGCGGGAGGCACAACCAACTGCGTGCCGTCCTCCAGTTGCAGTTTGTCGGTCATCAACATACGCACTTCGTACGCGAGGACTTTATTAAACTGCTGGAGGCTCGGCAAAATCGCGAAGTTCAGCACCACCAGATAAGTCGTCACCAGGCTGGCGAACAGCAAGGTGACGATGAGCAATAACGTACGGGCAAATGAACTTCGTGGCGAGAAGCGCAATCGCCTCATGCTTTAGAGCCGTCCGGTACAAAGA  >  CP009273/3528746‑3529252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.