New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3771260	27 (1.560)	4 (0.250)	4/284	NT	13.3%	coding (502/1656 nt)	lldP	L‑lactate permease
	?	CP009273	= 3771405	27 (1.670)					coding (647/1656 nt)	lldP	L‑lactate permease

TGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTA  >  CP009273/3771002‑3771529                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                              tGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTgggtcga                                                                                                                                                                                                                                                                >  1:21748/1‑269 (MQ=255)              cAGCGGTGTTCGTCTATAAGATCTCGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCCTTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATc                                                                                                                                                                                                                                                  >  1:57354/1‑275 (MQ=255)                                     tcGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAATCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGccaggtaacctg                                                                                                                                                                                                                           >  1:177161/1‑272 (MQ=255)                                             aaCCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCAATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTAGGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGAc                                                                                                                                                                                                                    >  1:168416/1‑274 (MQ=255)                                                            actcgttCCCTCGTCTATTCTTTCGCTCACCCCGGTCCAGCGGCTGCAAATGCTGATCGTCTGTGTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTGGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCTCTGTACGCCGCCTGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTc                                                                                                                                                                                                    <  2:57352/270‑1 (MQ=255)                                                                 ttCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTTCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGCTTGGTCAGAtg                                                                                                                                                                                               >  1:130510/1‑275 (MQ=255)                                                                                                             gtgatggtctngtgTTTCTGTTTCGGCGCGGCCCTTGAAGTGGCCGCCGGCTTTGGCGCACCGGTAGCCATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAACCCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCt                                                                                                                                                    <  2:27292/261‑1 (MQ=255)                                                                                                                                         cgTTCCTTGAAGGAGCCGCAGGCTTTGGTGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGctggcg                                                                                                                        >  1:51700‑M2/1‑268 (MQ=255)                                                                                                                                                        ccGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGCTCGGCCTGGGCTGTAAATCGCTGTCCGCTGCCGGTCTGTGCCTGCGTGTTAACATCGCGCCAGTGGCACTCGGTGCCATGGGCATTCCAATCCTGGTTGCCGGacaggtaacaggta                                                                                                                                                                                                                         >  2:206023/1‑162 (MQ=255)                                                                                                                                                        cagCAGGCTTGGGTCCCCCGGTCGCAATTACCGCCGAATTGCTGATCGGACTGGGTTGTAAACCGCTGTACGCCGCCGGGATGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCgg                                                                                                                                                                                                                                                                >  2:226375/3‑122 (MQ=255)                                                                                                                                                            aGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGa                                                                                                                                                                                                                     <  1:206029/162‑1 (MQ=255)                                                                                                                                                            aGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTCTTAACACCGCGCCAGTGGCATTTGGTGCGATggg                                                                                                                                                                                                                                                            <  1:226381/123‑1 (MQ=255)                                                                                                                                                                     cgcACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTc                                                                                            <  1:99135/274‑1 (MQ=255)                                                                                                                                                                       cACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGccgtccataatcgccatgatccagaacagcacg                                                                                                                                                                                                                                              >  1:130366‑M1/1‑93 (MQ=255)                                                                                                                                                                           ggTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGccgtccataatcgccatgatccagaacagcacgataa                                                                                                                                                                                                                                          <  2:130364‑M1/126‑38 (MQ=255)                                                                                                                                                                                    tACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGccgtccataatcgccatgatccagaacagcacgataatggtcataaacggtagctgccgccccaccttct                                                                                                                                                                                                         >  1:297329‑M1/1‑80 (MQ=255)                                                                                                                                                                                        gccgcATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGccgtccataatcgccatgatccagaacagcacgataatggtcataaacggtagctgccgccccaccatctgacc                                                                                                                                                                                                     <  2:297318‑M1/150‑75 (MQ=255)                                                                                                                                                                                         ccgcATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTgg                                                                                                                                                                                                                                                                     >  2:7174/1‑85 (MQ=255)                                                                                                                                                                                          cgcATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTAt                                                                                                                                                               >  1:140854/1‑186 (MQ=255)                                                                                                                                                                                             aTTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCg                                                                                                                                                                                                                                                                 <  1:7174/85‑1 (MQ=255)                                                                                                                                                                                              ttGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg                                                                                                                                                           <  2:140851/186‑1 (MQ=255)                                                                                                                                                                                                                  tAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTANGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGtctgtctcttata                                              >  1:289716/1‑263 (MQ=255)                                                                                                                                                                                                                    tggcgcgggtcgccgcGGGGCTTGGCCTGTGTTTTTACACCGCTCCTGTGGCATTTGGTTCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACCGGTATCGACAGCTTGGAGGTTGGTCAGATGGTGGGGCGGCAGCTACCGGTTATGACCATTATTGTGCTGTTCTGGATCATGGCGATTATTGACGGCTGGCGCGGTATCAACGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTaa                                             <  2:99994/264‑1 (MQ=255)                                                                                                                                                                                                                            tACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACGGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTAt                                                                                                                                                               >  1:93075/1‑152 (MQ=255)                                                                                                                                                                                                                                ccgcggGGCTGTGCCTGGTTGTTAACACCGCGGCAGTGGCATTTGGTGCGATGGGCATTCCATTCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg                                                                                                                                                           <  2:93073/152‑1 (MQ=255)                                                                                                                                                                                                                                    cgGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTgg                                                                                                                                                                                                                                                                     >  2:181121/1‑42 (MQ=255)                                                                                                                                                                                                                                        cTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCg                                                                                                                                                                                                                                                                 <  1:181125/42‑1 (MQ=255)                                                                                                                                                                                                                                           tgCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGacag                                                                                                                                                                                                                                   >  2:276440/1‑69 (MQ=255)                                                                                                                                                                                                                                               tGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGacaggtaa                                                                                                                                                                                                                               <  1:276451/69‑1 (MQ=255)                                                                                                                                                                                                                                                           ccGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTAt                                                                                                                                                               >  1:74870/1‑121 (MQ=255)                                                                                                                                                                                                                                                            cgcgCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTAt                                                                                                                                                               >  1:244373/1‑120 (MQ=255)                                                                                                                                                                                                                                                              cgcCAGccgtccataatcgccatgatccagaacagcacgataatggtcataaacggtagctgccgccccaccatctgaccaatctcaaagctgtcgatacctgttacctgtccggcaaccaggattggaatgcccatcgcaccaaatgccactggcgcggtgttaacaatcaggcacagcccggcggcgtacagcggtttaaaacccaggccgaccagcaatgcggcggtaattgctaccggtgcaccaaagcctgcggctccttcaaggaacg   >  1:51700‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                              cgcCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTACGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTACCTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTa  >  1:271244/1‑275 (MQ=255)                                                                                                                                                                                                                                                               gcCAGTGGCATTTGGTGCGATGGGCATTCCATTCCTGGTTGCCGGATCTGTAACAGGTATCGACAGCTTTGATATTGGTCAGATGGTGGGTCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCAGGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGt                                                                                             <  1:71107/183‑1 (MQ=255)                                                                                                                                                                                                                                                               gcCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg                                                                                                                                                           <  2:74868/121‑1 (MQ=255)                                                                                                                                                                                                                                                                ccAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTg                                                                                                                                                           <  2:244365/120‑1 (MQ=255)                                                                                                                                                                                                                                                                   gTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGc                                                                                                                                                                                                                                          >  2:27115/1‑38 (MQ=255)                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                              TGGATCATTATTGCAGCGGTGTTCGTCTATAAGATCTCGGTGAAAACCGGGCAGTTTGACATCATTCGCTCGTCTATTCTTTCGATAACCCCTGACCAGCGTCTGCAAATGCTGATCGTCGGTTTCTGTTTCGGCGCGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTA  >  CP009273/3771002‑3771529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.