New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3771260	27 (1.560)	4 (0.250)	4/284	NT	13.3%	coding (502/1656 nt)	lldP	L‑lactate permease
	?	CP009273	= 3771405	27 (1.670)					coding (647/1656 nt)	lldP	L‑lactate permease

CGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCACTGCTCTGCCTGACGCTGTTCCTCAAACGCTGGCAGCCAGTGCGTGTATTCCGTTTTGGTGATTTGGGGGCGTCACAGGTTGATATGACGCTGGCCCACACCGGTTACACTGCGGGTCAGGTGTTACGTGCC  >  CP009273/3771138‑3771664                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                    cgTTCCTTGAAGGAGCCGCAGGCTTTGGTGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGctggcg                                                                                                                                                                                                                                                               >  1:51700‑M2/1‑268 (MQ=255)                             cgcACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTc                                                                                                                                                                                                                                   <  1:99135/274‑1 (MQ=255)                                                                          tAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTANGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGtctgtctcttata                                                                                                                                                                                     >  1:289716/1‑263 (MQ=255)                                                                            tggcgcgggtcgccgcGGGGCTTGGCCTGTGTTTTTACACCGCTCCTGTGGCATTTGGTTCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACCGGTATCGACAGCTTGGAGGTTGGTCAGATGGTGGGGCGGCAGCTACCGGTTATGACCATTATTGTGCTGTTCTGGATCATGGCGATTATTGACGGCTGGCGCGGTATCAACGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTaa                                                                                                                                                                                    <  2:99994/264‑1 (MQ=255)                                                                                                                      cgcCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTACGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTACCTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTa                                                                                                                                         >  1:271244/1‑275 (MQ=255)                                                                                                                       gcCAGTGGCATTTGGTGCGATGGGCATTCCATTCCTGGTTGCCGGATCTGTAACAGGTATCGACAGCTTTGATATTGGTCAGATGGTGGGTCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCAGGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGt                                                                                                                                                                                                                                    <  1:71107/183‑1 (MQ=255)                                                                                                                                                                            cagggatgtgcggCTTTGGGTTTGGTCGCGTGGCGGGGGGTCCGCTACGGTTTGTGGCCGTTTTCGTTCTGTTCTGGTTCCGGGGGGGTATGGGCGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCACTGCTCTGCCTGACGCTGTTCCTCAATCGCTGGCAGCCAGTGCGTGTAtt                                                                                    <  2:305612/262‑1 (MQ=255)                                                                                                                                                                                  tCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAaga                                                                                                                                                                                                                                                   >  1:181623/1‑109 (MQ=255)                                                                                                                                                                                      cAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACg                                                                                                                                                                                                                                               <  2:181619/109‑1 (MQ=255)                                                                                                                                                                                       aGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGttt                                                                                                                                                                                                              >  1:284627/1‑141 (MQ=255)                                                                                                                                                                                           ttGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCa                                                                                                                                                                                                          <  2:284616/141‑1 (MQ=255)                                                                                                                                                                                                   ggTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGctggcgcggtgttaacaatcaggcacagcccggcggcgtacagcggtttaaaacccaggccgaccagcaatgcggc                                                                                                                                                                                         <  2:297318‑M2/150‑77 (MQ=255)                                                                                                                                                                                                    gTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCACTGCTCTGCCTGACGCTGTTCCTCAAACGCTGGCAGCCAGTGCGTGTATTCCGTTTTGGTGATTTGGGGGCGTca                                                           <  1:17702/275‑1 (MQ=255)                                                                                                                                                                                                    gTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCACTGCTCTGCCTGACGCTGTTCCTCAAACGCTGGCAGCCAGTGCGTGTATTCCGTTTTGGTGATTTGGGGGCGTca                                                           >  1:34287/1‑275 (MQ=255)                                                                                                                                                                                                       aGAAGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGctggcgcggtgttaacaatcaggcacagcccggcggcgtacagcggtttaaaacccaggccgaccagcaatgcggcggta                                                                                                                                                                                     >  1:297329‑M2/1‑70 (MQ=255)                                                                                                                                                                                                               gggCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCACTGCTCTGCCTGACGCTGTTCCTCAAACGCTgg                                                                                                     >  1:265347/1‑222 (MQ=255)                                                                                                                                                                                                                   ggcAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCACTGCTCTGCCTGACGCTGTTCCTCAAACGCTGGCAGc                                                                                                 <  2:265339/222‑1 (MQ=255)                                                                                                                                                                                                                                 aTGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCGGGTATCACTGCTCTGCCTGNCGCTGTTCCTCAAACGCTGGCAGCAAGTGCgtg                                                                                        >  1:263749/1‑217 (MQ=255)                                                                                                                                                                                                                                        ttATCGTGCTGTTCTGGATCATGGCGATTATGGACGGctggcgcggtgttaacaatcaggcacagcccggcggcgtacagcggtttaaaacccaggccgaccagcaatgcggcggtaattgctacc                                                                                                                                                                            <  2:130364‑M2/126‑90 (MQ=255)                                                                                                                                                                                                                                        ttATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAaga                                                                                                                                                                                                                                                   >  1:251602/1‑55 (MQ=255)                                                                                                                                                                                                                                            cGTGCTGTTCTGGATCATGGCGATTATGGACGGctggcgcggtgttaacaatcaggcacagcccggcggcgtacagcggtttaaaacccaggccgaccagcaatgcggcggtaattgctaccggtg                                                                                                                                                                        >  1:130366‑M2/1‑33 (MQ=255)                                                                                                                                                                                                                                            cGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACg                                                                                                                                                                                                                                               <  2:251594/55‑1 (MQ=255)                                                                                                                                                                                                                                                cTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCAc                                                                                                                                     >  2:275562/1‑157 (MQ=255)                                                                                                                                                                                                                                                   ttCTGGATCATGGCGATTATGGACGGCTGGCGCGATATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAg                                                                                                                                                                                                  >  1:221503/1‑93 (MQ=255)                                                                                                                                                                                                                                                    tCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCACTGct                                                                                                                                 <  1:275573/157‑1 (MQ=255)                                                                                                                                                                                                                                                       ggATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTAcc                                                                                                                                                                                              <  2:221497/93‑1 (MQ=255)                                                                                                                                                                                                                                                           cATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATc                                                                                                                                                                                                        >  2:231380/1‑79 (MQ=255)                                                                                                                                                                                                                                                             tGGCGATTATGGACGGCTGGCGCGGTATCAAAGCGACGTTGCCTGCGGTCGTGGTTGCGGGCGGCTCGATTGCCATCACTCAGTACCCTAGCTCTGACATCATTGCGCCGGTTCTGCCGGTCTTTATCTCTTCCCCGCTCTCACTTCTCTCCCTGACGCTGTTCCGCACACGCTTCCAACCCCTGCTTGTATTACGTTTCTTTGTTTTTTGGGGGCCACGAGTGTACATTAGGCTGGCCGACCCAGGTTAGATTGTGCGTCAGgtggcttgcgc   >  2:43637/1‑266 (MQ=255)                                                                                                                                                                                                                                                             tGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGt                                                                                                                                                                                                                                              >  1:64315/1‑39 (MQ=255)                                                                                                                                                                                                                                                             tGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACCTTATCTCTTCGCTGGTATCACTGCTCTGCCTGACGCTGTTCCCCAAACGCTGGCAGCCAGTGCGTGTCTTCCGTTTTGGTGATTTGGGGGCGTCACAGGTCGATATGACCCTGGCCCACCCCGGTTACACTTCTGGTCAgggtggtgttgcc  >  2:326528/1‑264 (MQ=255)                                                                                                                                                                                                                                                               gCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTCAGAGCGGCTCGTTTGCCATCGCTc                                                                                                                                                                                                    <  1:231387/79‑1 (MQ=255)                                                                                                                                                                                                                                                                 gATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGcc                                                                                                                                                                                                                                          <  2:64313/39‑1 (MQ=255)                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                    CGTTCCTTGAAGGAGCCGCAGGCTTTGGCGCACCGGTAGCAATTACCGCCGCATTGCTGGTCGGCCTGGGTTTTAAACCGCTGTACGCCGCCGGGCTGTGCCTGATTGTTAACACCGCGCCAGTGGCATTTGGTGCGATGGGCATTCCAATCCTGGTTGCCGGACAGGTAACAGGTATCGACAGCTTTGAGATTGGTCAGATGGTGGGGCGGCAGCTACCGTTTATGACCATTATCGTGCTGTTCTGGATCATGGCGATTATGGACGGCTGGCGCGGTATCAAAGAGACGTGGCCTGCGGTCGTGGTTGCGGGCGGCTCGTTTGCCATCGCTCAGTACCTTAGCTCTAACTTCATTGGGCCGGAGCTGCCGGACATTATCTCTTCGCTGGTATCACTGCTCTGCCTGACGCTGTTCCTCAAACGCTGGCAGCCAGTGCGTGTATTCCGTTTTGGTGATTTGGGGGCGTCACAGGTTGATATGACGCTGGCCCACACCGGTTACACTGCGGGTCAGGTGTTACGTGCC  >  CP009273/3771138‑3771664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.