New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3789695 =	14 (0.810)	5 (0.300)	3/294	NT	23.5%	coding (357/960 nt)	waaC	ADP‑heptose:LPS heptosyl transferase I
	?	CP009273	3789776 =	19 (1.140)					coding (438/960 nt)	waaC	ADP‑heptose:LPS heptosyl transferase I

GGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAG  >  CP009273/3789442‑3789966                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                gtgtggtgGAATAAGTGTTCGCACAGAGTCCTTCCTGGCACGCTGCCGTTCAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGGGCTACAAGCAGAGAACTATGTCGGAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCTTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTagccagc                                                                                                                                                                                                                                                               <  1:139815/270‑1 (MQ=255)                                            tGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCCCGCGAACCTTTAGCCAGCCAGTTTTACAATCGTACGCACCATATTGCCAAAcagccctactct                                                                                                                                                                                                                  >  2:51570/1‑266 (MQ=255)                                            acaggtttaatccgtattcctgaatcagccagtaaaccaatcaattctcgccagtgttcttccggccagtgtttatcatcacgggtcgtcgcatgaagaaatacggcatattcgccagcatctgtaggcaggttcgtcagaaaatgctgtgcgatagcataatcgccctgggtttgcggtttgctatagcccaaacttttggcaaacagtTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCg                                                                                                                                                                                                                 >  1:115529‑M1/211‑275 (MQ=255)                                                                                                                        cGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCNGGTGACGCNTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGc                                                                                                                                     <  1:221424/275‑1 (MQ=255)                                                                                                                             cgggtcgtcgcatgaagaaatacggcatattcgccagcatctgtaggcaggttcgtcagaaaatgctgtgcgatagcataatcgccctgggtttgcggtttgctatagcccaaacttttggcaaacagtTcgc                                                                                                                                                                                                                                                                              <  2:228517‑M1/4‑1 (MQ=255)                                                                                                                                          gcgcTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCGGACCGCAAACCCAGGACGATTATGCTATCGCACAGCATTTTCTGACGaa                                                                                                                   <  1:51571/275‑1 (MQ=255)                                                                                                                                                           tcgccagcatctgtaggcaggttcgtcagaaaatgctgtgcgatagcataatcgccctgggtttgcggtttgctatagcccaaacttttggcaaacagtTcgc                                                                                                                                                                                                                                                                              <  1:165990‑M1/4‑1 (MQ=255)                                                                                                                                                                   cAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTaa                                                                                                                                                                                                                                              >  1:202489/1‑127 (MQ=255)                                                                                                                                                                    cgTTAGCGACGCTCAGTGGCTGGTCAAACGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCNTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATg                                                                                         <  1:289348/274‑1 (MQ=255)                                                                                                                                                                       tATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGcat                                                                                                                                                                                                                                          <  2:202483/127‑1 (MQ=255)                                                                                                                                                                                tCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATttc                                                                                >  1:753/1‑272 (MQ=255)                                                                                                                                                                                  aGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACATGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCAt                                                                           >  1:61453/1‑275 (MQ=255)                                                                                                                                                                                          gTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAACcagc                                                                                                                                                                                                                          >  1:125973/1‑124 (MQ=255)                                                                                                                                                                                              aaaGCGCGGCGCTGGTGACGCGTCTAGCTCATGGCGTAAGGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAgcagca                                                                                                                                                                                                                      <  2:125971/124‑1 (MQ=255)                                                                                                                                                                                               aaGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGGTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGtg                                                              <  1:209773/275‑1 (MQ=255)                                                                                                                                                                                                                            cggtttgctatagcccaaacttttggcaaacagtTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCAc                                                                                                                                                                                                                     <  2:94793‑M1/61‑1 (MQ=255)                                                                                                                                                                                                                                ttgctatagcccaaacttttggcaaacagtTCGCGAACCTTTAGGCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCAc                                                                                                                                                                                                                     <  1:248664‑M1/61‑1 (MQ=255)                                                                                                                                                                                                                                ttgctatagcccaaacttttggcaaacagtTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCg                                                                                                                                                                                                                 >  1:94795‑M1/31‑95 (MQ=255)                                                                                                                                                                                                                                    tatagcccaatcttttggcaaacagtTCGCGAACCTTTAGTCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCg                                                                                                                                                                                                                 >  2:248656‑M1/27‑91 (MQ=255)                                                                                                                                                                                                                                      ncatngcgtcgACTGGCAAACCGCTCACGAACCGTTAGCAAGCCTGTTTTACAATCGTAAGCATCATAGTGCAAAACAGCAGAACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAattga                       <  2:753/274‑1 (MQ=255)                                                                                                                                                                                                                                                     gCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGTGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACAGGCGAGAATTGATTGGTTTACTGGCTg        >  1:43377/1‑275 (MQ=255)                                                                                                                                                                                                                                                             cTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCATCACCCCGGAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCTCCCAGCATTTTCTGCCGAACCTGCCTACGGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACACATAATGATAAACACGGGTCGGGAGAACACTGGCGAGGATGGATTGTTTGACTGCCggattgag  <  2:141357‑M1/272‑4 (MQ=255)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                GGGTGGTGGAAGAAGGGTTCGCACAGATTCCTTCCTGGCACGCTGCCGTTGAGCGAGTTATTCCTGTGGCAATACGTCGCTGGCGTAAAGCCTGGTTCTCGGCCCCCATAAAAGCGGAACGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAG  >  CP009273/3789442‑3789966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.