New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3789695 =	14 (0.810)	5 (0.300)	3/294	NT	23.5%	coding (357/960 nt)	waaC	ADP‑heptose:LPS heptosyl transferase I
	?	CP009273	3789776 =	19 (1.140)					coding (438/960 nt)	waaC	ADP‑heptose:LPS heptosyl transferase I

CGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTT  >  CP009273/3789561‑3790041                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                          cGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCNGGTGACGCNTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGc                                                                                                                                                                                                                <  1:221424/275‑1 (MQ=255)                   gcgcTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCGGACCGCAAACCCAGGACGATTATGCTATCGCACAGCATTTTCTGACGaa                                                                                                                                                                                              <  1:51571/275‑1 (MQ=255)                                             cgTTAGCGACGCTCAGTGGCTGGTCAAACGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCNTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATg                                                                                                                                                                    <  1:289348/274‑1 (MQ=255)                                                         tCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATttc                                                                                                                                                           >  1:753/1‑272 (MQ=255)                                                           aGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACATGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCAt                                                                                                                                                      >  1:61453/1‑275 (MQ=255)                                                                        aaGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGGTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGtg                                                                                                                                         <  1:209773/275‑1 (MQ=255)                                                                                                               ncatngcgtcgACTGGCAAACCGCTCACGAACCGTTAGCAAGCCTGTTTTACAATCGTAAGCATCATAGTGCAAAACAGCAGAACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAattga                                                                                                  <  2:753/274‑1 (MQ=255)                                                                                                                              gCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGTGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACAGGCGAGAATTGATTGGTTTACTGGCTg                                                                                   >  1:43377/1‑275 (MQ=255)                                                                                                                                      cTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCATCACCCCGGAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCTCCCAGCATTTTCTGCCGAACCTGCCTACGGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACACATAATGATAAACACGGGTCGGGAGAACACTGGCGAGGATGGATTGTTTGACTGCCggattgag                                                                             <  2:141357‑M1/272‑4 (MQ=255)                                                                                                                                            aaCCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCg                                                                                                                                           <  1:10638/205‑1 (MQ=255)                                                                                                                                                       cggcgtgctgctgttttgcaatatgatgcttacgattgtaaaacaggctggctaaaggttcgcgaACTGTTTGCCAAAAGTTTGGGCTATAgcaa                                                                                                                                                                                                                                              >  1:94795‑M2/66‑95 (MQ=255)                                                                                                                                                       cggcgtgctgctgttttgcaatatgatgcttacgattgtaaaacaggctggctaaaggttcgcgaACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATtaaacctgt                                                          >  1:115529‑M2/66‑271 (MQ=255)                                                                                                                                                       cggcgtgctgctgttttgcaatatgatgcttacgattgtaaaacaggctgactaaaggttcgcgaACTGTTTGCCAAAAGATTGGGCtata                                                                                                                                                                                                                                                  >  2:248656‑M2/66‑91 (MQ=255)                                                                                                                                                         ccTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGcc                                                                                                                         >  1:65236/1‑210 (MQ=255)                                                                                                                                                         ccTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAAACGCAAACCCATGGCGATTATGATATCGCACAGCATTTTCTGACGAACCTCCCCACAGATGCTGTCGAATCTGCCGTATTTCTTCATGCGACGACCCTTGATGATAAACACTGGCCGGAAGAACAAGGGGGAGAATTCATTGGTGCACGGGCTGCTTCAGGAGTACGGAATAAACtgtcgt                                                        >  2:62453/1‑270 (MQ=255)                                                                                                                                                           gtgctgctgttttgcaatatgatgcttacgattgtaaaacaggctggctaaaggttcgcgaACTGTTTGCCAAAAGTTTGGGCTATAgcaaaccg                                                                                                                                                                                                                                          <  2:94793‑M2/34‑1 (MQ=255)                                                                                                                                                           gtgctgctgttttgcaatatgatgcttacgattgtaaaacaggctgcctaaaggttcgcgaACTGTTTGCCAAAAGTTTGGGCTATAgcaa                                                                                                                                                                                                                                              <  1:248664‑M2/30‑1 (MQ=255)                                                                                                                                                                        tAAGCATCATATTGCAAACCAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGAGTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCTAATATGCCGTATTTCTTCATGCGACGACCCGTTATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGTTTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATg                                         <  1:62455/275‑1 (MQ=255)                                                                                                                                                                                 tatTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAgg                                                                                                                                                                                                                                >  1:150826/1‑83 (MQ=255)                                                                                                                                                                                     gCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGa                                                                                                                                                                                                                            <  2:150822/83‑1 (MQ=255)                                                                                                                                                                                         aaCAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCaa                                                                                                                                                                                                                                                                >  2:5036/1‑43 (MQ=255)                                                                                                                                                                                             gcagcaCGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGt                                                                                                                                                                                                                                                            <  1:5036/43‑1 (MQ=255)                                                                                                                                                                                              cagcaCGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTgg                                                                                      >  2:150013/1‑208 (MQ=255)                                                                                                                                                                                                  aCGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGa                                                                                  <  1:150016/208‑1 (MQ=255)                                                                                                                                                                                                        tacaaCGCACCCGCGAATTTTTTGCCAAAAGTTTTGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGa         <  1:141360/272‑1 (MQ=255)                                                                                                                                                                                                              gCACCCGCTAACTGTTTGCCAAAAGTTTGGGCTATAGCAAATCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTGCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGAGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGAGTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCt   <  1:119453/275‑1 (MQ=255)                                                                                                                                                                                                                aCCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTg                                                                                                                                                                             >  2:165986/1‑103 (MQ=255)                                                                                                                                                                                                                aCCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGANGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCtt  >  1:306519/1‑274 (MQ=255)                                                                                                                                                                                                                aCCCGCGAACTGTTTGCCAAAAGTTTGGACTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGcgacga                                                                                                                                               >  1:228523/1‑133 (MQ=255)                                                                                                                                                                                                                    gcgaACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGa                                                                                                                                                                         <  1:165990‑M2/99‑1 (MQ=255)                                                                                                                                                                                                                    gcgaACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCg                                                                                                                                           <  2:228517‑M2/129‑1 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                          CGCAAAGCGTTTCGTGAAGCGCTACAAGCAGAGAACTATGACGCAGTTATCGACGCTCAGGGGCTGGTAAAAAGCGCGGCGCTGGTGACGCGTCTGGCGCATGGCGTAAAGCATGGCATGGACTGGCAAACCGCTCGCGAACCTTTAGCCAGCCTGTTTTACAATCGTAAGCATCATATTGCAAAACAGCAGCACGCCGTAGAACGCACCCGCGAACTGTTTGCCAAAAGTTTGGGCTATAGCAAACCGCAAACCCAGGGCGATTATGCTATCGCACAGCATTTTCTGACGAACCTGCCTACAGATGCTGGCGAATATGCCGTATTTCTTCATGCGACGACCCGTGATGATAAACACTGGCCGGAAGAACACTGGCGAGAATTGATTGGTTTACTGGCTGATTCAGGAATACGGATTAAACTTCCGTGGGGCGCGCCGCATGAGGAAGAACGGGCGAAACGACTGGCGGAAGGATTTGCTT  >  CP009273/3789561‑3790041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.