New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3993456	28 (1.620)	3 (0.180)	3/286	NT	10.3%	coding (2114/2163 nt)	uvrD	DNA‑dependent ATPase I and helicase II
	?	CP009273	= 3993936	26 (1.600)					coding (481/765 nt)	yigE	DUF2233 family protein

CCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGAAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTTTAACCTTTCCGCTCGACGGAAATCATGGTGACAAAAGGATAGCGTTGCCACGGGATTGCCCCGCCTTTCA  >  CP009273/3993226‑3993722                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                           cccGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGAAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCCCGGCCAGCGCGTACGCCACGCTAAGCTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGCGAGCATGGCCGTGGGCAGGTGGCATTTCAGTGCAAGGGGAGTAAATGGCAGGTGGGGGCCTAGGCCCGGCTGGAGtttg                                                                                                                                                                                                                                >  2:104249/1‑272 (MQ=255)                     aGCTGCCGGAAGAGTGTGTGGAAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAatgttgatggaaaacggtgtaattaatccgcgtattcatcccaacgtcgcctcaagcaaaattc                                                                                                                                                                                                            >  1:186457‑M1/1‑211 (MQ=255)                                                      tGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCA                                                                                                                                                                                                                                                                            <  2:163811‑M1/178‑1 (MQ=255)                                                                                        gCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGATGCCGGAGGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGcag                                                                                                                                          >  1:322426/1‑272 (MQ=255)                                                                                         cGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAGATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGa                                                                                                                                        <  1:1853/275‑1 (MQ=255)                                                                                            aTGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTTGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCNTCTAGGcctgcta                                                                                                                                      >  2:247772/1‑269 (MQ=255)                                                                                                        acggTCGAGAACGACAGCGCCTCCAAGCTCTGCCATGGCCTACCCCACCCTAAGTTTGTTGAAGGCACTATTGTGTATAAGGAAGGCAGCGGTGAGGATAGCCGTTTGCAGGTGGCCTTTCAGGGCCAGGGTATTAAATGGCTGGTGGCTGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTAcgc                                                                                                                          <  2:322414/272‑1 (MQ=255)                                                                                                           gTCGAGAACGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTAcgccgc                                                                                                                       >  1:115033/1‑274 (MQ=255)                                                                                                             cGAGAACGACAGCGGCTACAAGCTCGTCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAg                                                                                                                                                                                                                                                                           >  1:222869/1‑124 (MQ=255)                                                                                                                 aaCGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTa                                                                                                                                                                                                                                                                       <  2:222863/124‑1 (MQ=255)                                                                                                                                     cgaccaggggcgaCGCCACGGTTGGTTGGTGGAAGGCACCGTTTTCTCTATGGAAGGCAGCGGTGAGCATAGCCGTTGGCAGGTGGCATTTCAGGGGCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTAt                                                                                            <  2:307054/263‑1 (MQ=255)                                                                                                                                       gCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCCGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTAc                                                                                                                            >  1:123347/1‑241 (MQ=255)                                                                                                                                                               ttGGTGAAGGCACCATCGTCAATATGGAGGGCAGCGGTGAGCATCGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAACAAANTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTTTAACCt                                                                  >  1:241102/1‑275 (MQ=255)                                                                                                                                                                      aGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTgg                                                                                                                                                                                         >  1:95897/1‑149 (MQ=255)                                                                                                                                                                          aCCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTa                                                                                                                                                                                     <  2:95895/149‑1 (MQ=255)                                                                                                                                                                                 tCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGgtg                                                                                                                                                                                                                              >  2:41069/1‑101 (MQ=255)                                                                                                                                                                                 tCAATATGGAAGGCAGCGGCGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTTTAACCTTTCCGCTCGACGGAAATc                                                >  1:271226/1‑275 (MQ=255)                                                                                                                                                                                   aaTATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAatgttgatggaaaacggtgtaattaatccgcgtattcatcccaacgtcgcctcaagcaaaa                                                                                                                                                                                                               >  1:32119‑M1/1‑53 (MQ=255)                                                                                                                                                                                     tatGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAAc                                                                                                                                                                                                                          <  1:41070/101‑1 (MQ=255)                                                                                                                                                                                       tGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAatgttgatggaaaacggtgtaattaatccgcgtattcatcccaacgtcgcctcaagcaaaattcg                                                                                                                                                                                                           <  2:32119‑M1/114‑66 (MQ=255)                                                                                                                                                                                       gggAAGGGAGGGGTGAGCATAGCAGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTTTAACCTTTCCGCTCGACGGAAATCATGGt                                           <  2:271215/273‑1 (MQ=255)                                                                                                                                                                                         gAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTAAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGtgctgc                                                                                                                                                                                                      >  1:95231/1‑117 (MQ=255)                                                                                                                                                                                          aaGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTgcg                                                                                                         >  2:243707/1‑209 (MQ=255)                                                                                                                                                                                           aGGCAGCGGTGAGCATAGTCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGNAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAGACTATCGTTTTAACCCTTCCGCTCGACGGAAATCATGGTGACaa                                      <  1:247780/275‑1 (MQ=255)                                                                                                                                                                                              cAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCAt                                                                                                     <  1:243715/209‑1 (MQ=255)                                                                                                                                                                                                     gAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCA                                                                                                                                                                                                                                                                            <  1:134260‑M1/35‑1 (MQ=255)                                                                                                                                                                                                     gAGCATAGCCGTTAGCAGGTGGAATTTCAGGGCCAGGGGATTAAATAGCTGGTGGAGGCATACGCCCGTCTGGAGTCGGAGTAACGTTGCCGGATGCGGTGCTGCGCAACTTATGTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGACGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCATCAGTATATGACACAAAACTACAGTATTAACCATTCCGCTCGACGGAAATCAATGTGACAAAAGGCTAGca                            >  2:19060/1‑274 (MQ=255)                                                                                                                                                                                                           aGCGGTTGGCAGTTGGCAGTGCAGGGTCAGGGTATTAATTGGCTGTTGGCGTCATACGCACGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTTTAACCTTTCCGCTCGACGGAAATCATGGTGACAAAAGGATAGCGTTGcc                       <  2:115031/274‑1 (MQ=255)                                                                                                                                                                                                           aGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTTTAACCTTTCCGCTCGACGGAAATCATGGTGACAAAAGGAAAGCGATGcc                       >  1:19396/1‑274 (MQ=255)                                                                                                                                                                                                                tttGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATc                                                                                                                                                                              >  2:256308/1‑118 (MQ=255)                                                                                                                                                                                                                  tGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAAt                                                                                                                                                             >  1:14733/1‑133 (MQ=255)                                                                                                                                                                                                                    cAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTc                                                                                                                                                                          <  1:256316/118‑1 (MQ=255)                                                                                                                                                                                                                      ggTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCa                                                                                                                                                         <  2:14733/133‑1 (MQ=255)                                                                                                                                                                                                                            aTTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTTTAACCTTTCCGCTCGACGGAAATCATGGTGACAAAAGGATAGCGTTGCCACGGGATTGCCCAGCCt      <  1:104251/274‑1 (MQ=255)                                                                                                                                                                                                                               taaGGGCGAGGGANNGAAAGGGCGGGGGGAGGCATACGCCCGGGTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAACAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTGTAACCTTTCCGCTCGACGGAAATCATGGTGACAAAAGGATAGCGTTGCCACGGGATTGCCCCGCCTTTCa  <  2:241095/273‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                           CCCGTCGCGCTTTATCGGCGAGCTGCCGGAAGAGTGTGTGGAAGAGGTGCGCCTGCGCGCCACGGTAAGCCGCCCGGTCAGCCATCAGCGGATGGGTACGCCGATGGTCGAGAACGACAGCGGCTACAAGCTCGGCCAGCGCGTACGCCACGCTAAGTTTGGTGAAGGCACCATTGTCAATATGGAAGGCAGCGGTGAGCATAGCCGTTTGCAGGTGGCATTTCAGGGCCAGGGTATTAAATGGCTGGTGGCGGCATACGCCCGGCTGGAGTCGGTGTAACGTTGCCGGATGCGGTGCTGCGCACCTTATTTGGCCTAAAAAATCATTCAGATTCAATAAATTGCAACGTCATGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCATCTGCGCCATCTTCAGTATCTGACACAAAACTATCGTTTTAACCTTTCCGCTCGACGGAAATCATGGTGACAAAAGGATAGCGTTGCCACGGGATTGCCCCGCCTTTCA  >  CP009273/3993226‑3993722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.