New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3993456	28 (1.620)	3 (0.180)	3/286	NT	10.3%	coding (2114/2163 nt)	uvrD	DNA‑dependent ATPase I and helicase II
	?	CP009273	= 3993936	26 (1.600)					coding (481/765 nt)	yigE	DUF2233 family protein

GGTGACAAAAGGATAGCGTTGCCACGGGATTGCCCCGCCTTTCATATACATATGTGAAATCGTGCCATCAAGATAAAGCAGCTGCTCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTCATCATAGATGCCGCCGTTCATCGCCATCTGCACCTGACCCTGACTATTAATATCCGCCAGCA  >  CP009273/3993679‑3994193                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                  ggTGACAAAAGGATAGCGTTGCCACGTGATTGCCCCGCCTTTCATATACATATGTGAAATCGTGCCATCAAGATAAAGCAGCTGCTCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATNATAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCg                                                                                                                                                                                                                                                  <  1:286532/275‑1 (MQ=255)                                      ccTTTCATATACATATGTGAAATCGTGCCATCAAGATAAAGCAGCTGCTCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAAACTCTTTACTGGTTTTGAAGGCAtaaa                                                                                                                                                                                                              >  1:85675/1‑271 (MQ=255)                                      ccTTTCATATACATATGTGAAATCGTGCCATCAAGATAAAGCAGCTGCTCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGGTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACGGCAAACAGAATCACTTTACAGGTATTGAAAGCATCCa                                                                                                                                                                                                              >  1:188178/1‑274 (MQ=255)                                                    atGTGAAATCGTGCCATCAAGATAAAGCAGCTGCTCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGCTGGCTCAACAACAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTCCACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTGACTGGGTTTGAAGACATCCAGACGACCGATGCCGa                                                                                                                                                                                               >  1:209311/1‑275 (MQ=255)                                                         aaaTCGTGCCATCAAGATAAAGCAGCTGTGCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTANACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCAGACTTTa                                                                                                                                                                                          >  1:229488/1‑275 (MQ=255)                                                            tCGTGCCATCAAGATACAGCAGCTGCTCCACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACNGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTAtct                                                                                                                                                                                       >  1:244987/1‑275 (MQ=255)                                                                gCCATCAAGATAAAGCAGCTTCTCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGATGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATc                                                                                                                                                                                                                <  1:6754/246‑1 (MQ=255)                                                                                  ctgctCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCATAAGAACGATGCCGACTTTATCTCACGCGACATAAAACAcgccgc                                                                                                                                                                 >  1:104326/1‑275 (MQ=255)                                                                                                                     taaaaTCATAAAAANTTGTTGCCTGATGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGTATTAATTACCCCTTTTTCCATCAACCTTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTAGTATTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCg                                                                                                                              <  2:244979/274‑1 (MQ=255)                                                                                                                             tAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACtc                                                                                                                                                                                            >  2:86889/1‑204 (MQ=255)                                                                                                                                 aaTTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTCTAtc                                                                                                                                                                                        <  1:86891/205‑1 (MQ=255)                                                                                                                                                      acaaAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGATTTTGGAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAAATTTAACGCCACCTTCTGCTGACCGTTTTc                                                                                              >  1:295786/1‑274 (MQ=255)                                                                                                                                                                    ttCCAATGTTTTATCAGCCCAACCCCGTTACGACTTTTTCTTGAGGCGACGTTGGGTTTAATACGCGGATTAATTACACCTTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAg                                                                               <  2:295775/275‑1 (MQ=255)                                                                                                                                                                                           acCCTTACTAATTTTTCTTGAGGCGCCGTTTGGATGAATACGCCGATTAATTACTCCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCCGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTCATCATAGa                                                        <  2:85673/275‑1 (MQ=255)                                                                                                                                                                                                  cGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATtggccctgaaatgccacctgcaaacggctatgctcaccgctgccttcca                                                                                                                                                                                                                  <  2:32119‑M2/114‑50 (MQ=255)                                                                                                                                                                                                   gAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATtggccctgaaatgccacctgcaaacggctatgctcaccgctgccttccatattgacaatggtgccttcaccaaacttagcgtggcgtacgcgctggccgagcttgtagccgctgtcgttctcgaccatcggcgtacccatccgctgatggctgaccgggcggcttaccgtggcgcgcaggcgcacctcttccacacactcttccggcagct                                                >  1:186457‑M2/1‑64 (MQ=255)                                                                                                                                                                                                     aTTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTAtct                                                                                                                                                                                       >  2:92061/1‑138 (MQ=255)                                                                                                                                                                                                      ttttGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATtggccctgaaatgccacctgcaaacggctatgctcaccgctgccttccatatt                                                                                                                                                                                                              >  1:32119‑M2/1‑61 (MQ=255)                                                                                                                                                                                                         tGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCcg                                                                                                                                                                                   <  1:92063/138‑1 (MQ=255)                                                                                                                                                                                                                             aaaaTAAGAGGATTAATTACAAGTGTTTCCATCAACAGTGTCCCGNCCTGCACAGTAAACTTAATTTCTTTACTGGTTTGGAAGGCATCCAGAAGACCGAGGCAGACTTTATCGCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAAGTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTCATCATAGATGCCGCCGTTCATCGCCATCTGCAcctgaccct                       <  2:209305/272‑1 (MQ=255)                                                                                                                                                                                                                               aaTACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGaa                                                                                                                                                                                                                      >  2:297178/1‑81 (MQ=255)                                                                                                                                                                                                                               aaTACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATaaa                                                                                                                                                                          >  2:102666/1‑125 (MQ=255)                                                                                                                                                                                                                               aaTACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACAcgccgc                                                                                                                                                                 >  1:291133/1‑134 (MQ=255)                                                                                                                                                                                                                                   cgcgGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCa                                                                                                                                                                                                                  <  1:297189/81‑1 (MQ=255)                                                                                                                                                                                                                                   cgcgGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAacac                                                                                                                                                                      <  1:102668/125‑1 (MQ=255)                                                                                                                                                                                                                                   cgcgGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCGGCCAgg                                                                                                                                                             <  2:291122/134‑1 (MQ=255)                                                                                                                                                                                                                                                 acCGTTTGCCATCAACAGTGGCCCTGACTGCACCGCAAACTGTATCTCTTTACTGGTGTTGAAGGCATCCAGACGAACGATGCCGACCTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACTCCACCTTCGGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTCATCATAGATGCCGCCGTTCATCGCCATCTGCACCTGACCCTGACTATTAATATCCGCcagca  <  1:21640/275‑1 (MQ=255)                                                                                                                                                                                                                                                     ttttCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCt                                                                                                              >  2:282771/1‑163 (MQ=255)                                                                                                                                                                                                                                                         ccATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctg                                                                                                          <  1:282782/163‑1 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                  GGTGACAAAAGGATAGCGTTGCCACGGGATTGCCCCGCCTTTCATATACATATGTGAAATCGTGCCATCAAGATAAAGCAGCTGCTCAACGTTCAGTTTCGCTTTGGCATAACAGGCAAAATCATAAAAATTTGTTGCCTGCTGGCTCAACAAAAACACGGCGTTCCCATGTTTATTAATCCCAACACCGTTACGAATTTTGCTTGAGGCGACGTTGGGATGAATACGCGGATTAATTACACCGTTTTCCATCAACATTGGCCCTGACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTCATCATAGATGCCGCCGTTCATCGCCATCTGCACCTGACCCTGACTATTAATATCCGCCAGCA  >  CP009273/3993679‑3994193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.