New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4092328	18 (1.040)	4 (0.240)	4/290	NT	22.1%	coding (711/984 nt)	kdgT	2‑keto‑3‑deoxy‑D‑gluconate transporter
	?	CP009273	= 4092542	11 (0.670)					coding (925/984 nt)	kdgT	2‑keto‑3‑deoxy‑D‑gluconate transporter

TCATGACGATGATTATTCTGGGCACTGCCGGGATTGCCTCGTTTGAACCGCATGTTTTCGTCGGCGCAGTATTACCGTTCCTGGTGGGCTTTGCCCTGGGGAACCTTGACCCTGAATTGCGAGAATTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTT  >  CP009273/4092072‑4092457                                                                                                                                                                                                                                                                 |                                                                                                                                  tCATGACGATGATTATTCTGGGCACTGCCGGGATTGCCTCGTTTGAACCGCATGTTTTCGTCGGCGCAGTATTACCGTTCCTGGTGGGCTTTGCCCTGGGGAACCTTGACCCTGAATTGCGAGAATTTTTCAGCAAAGCGGTGCAAACGCTGNTTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATc                                                                                                                 >  1:279719/1‑275 (MQ=255)                                                                 cgcAGTATTACCGTTCCTGGTGGGCTTTGCCCTGGGGAACCTTGACCCTGAATTGCGAGAATTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCTGTAATTATCGTGACCGGTATTCGGTTGATTATCGCCGATAAATTGATTGTCGGTGGCGACGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAggg                                                  >  1:177737/1‑274 (MQ=255)                                                                  gtagtagtACGGGTGCTGGTGGGCTTTGCGCTGGGGAACGTTGATCCTTAATTGCGAGAATTTTTCAGTAAAGTGGTGCAAACGATGATTCCATTCGTTGCCGGCGCGCTGGGCAATATCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAggg                                                  <  2:279708/271‑1 (MQ=255)                                                                                ccTGGTGGGCTTTGCCCTGGGGAACCTTGACCCTGAATTGCGAGAATTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGa                                                                                                                      >  2:21896/1‑191 (MQ=255)                                                                                    gtggGCTTTGCCCTGGGGAACCTTGACCCTGAATTGCGAGAATTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTAt                                                                                                                  <  1:21896/191‑1 (MQ=255)                                                                                                                   aaTTGCGAGAATTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCagatagaggtaagaattggcaccagaatcgaagtcacaatgaccgccgtcgctac                                                                            >  1:248535‑M1/1‑143 (MQ=255)                                                                                                                       gagagaatTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCagatagaggtaagaattggcaccagaatcgaagtcacaatgaccgccgtcgctaccagc                                                                        <  2:248527‑M1/196‑60 (MQ=255)                                                                                                                                                           tCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATg                                                                                     >  2:23194/1‑149 (MQ=255)                                                                                                                                                               ttCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCAc                                                                                 <  1:23194/149‑1 (MQ=255)                                                                                                                                                                         tCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCNCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATgg             >  1:280758/1‑207 (MQ=255)                                                                                                                                                                                               tttGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGcc         <  1:158660/189‑1 (MQ=255)                                                                                                                                                                                                               cAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTg                                                                                           >  2:42794/1‑91 (MQ=255)                                                                                                                                                                                                                   cTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGa                                                                                       <  1:42795/91‑1 (MQ=255)                                                                                                                                                                                                                   cTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATCGCCGCTTCCAGTTc                                                         >  2:291612/1‑121 (MQ=255)                                                                                                                                                                                                                       tttGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCa                                                     <  1:291623/121‑1 (MQ=255)                                                                                                                                                                                                                           cTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCagatagaggtaagaattggcaccagaatcgaagtcacaatgaccgccgtcgctacca                                                                          >  1:40700‑M1/1‑39 (MQ=255)                                                                                                                                                                                                                               ggATCCTGTTGGGTGTGGCAGTAATTATCGTGACCagatagaggtaagaattggcaccagaatcgaagtcacaatgaccgccgtcgctaccagcga                                                                      <  2:40700‑M1/96‑62 (MQ=255)                                                                                                                                                                                                                                     tGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGc                                                >  1:261062/1‑112 (MQ=255)                                                                                                                                                                                                                                         gggTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCcgcg                                            <  2:261054/112‑1 (MQ=255)                                                                                                                                                                                                                                         gggTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACAcc                                 >  1:171529/1‑123 (MQ=255)                                                                                                                                                                                                                                             gtgGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCtgtg                             <  2:171525/123‑1 (MQ=255)                                                                                                                                                                                                                                                           cGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATgg             >  1:155083/1‑125 (MQ=255)                                                                                                                                                                                                                                                             tGACCagatagaggtaagaattggcaccagaatcgaagtcacaatgaccgccgtcgctaccagcgaagttgctgccggagccatcggtttaaacgcaggcaccatttctgca                        <  1:164216‑M1/112‑108 (MQ=255)                                                                                                                                                                                                                                                               aCCagatagaggtaagaattggcaccagaatcgaagtcacaatgaccgccgtcgctaccagcgaagttgctgccggagccatcggtttaaacgcaggcaccatttctgcaatcagcacaggtgtcgctaccg  >  2:124962‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                               aCCagatagaggtaagaattggcaccagaatcgaagtcacaatgaccgccgtcgctaccagcgaagttgctgccggag                                                        >  2:141625‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                               aCCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGcc         <  2:155079/125‑1 (MQ=255)                                                                                                                                                                                                                                                                 |                                                                                                                                  TCATGACGATGATTATTCTGGGCACTGCCGGGATTGCCTCGTTTGAACCGCATGTTTTCGTCGGCGCAGTATTACCGTTCCTGGTGGGCTTTGCCCTGGGGAACCTTGACCCTGAATTGCGAGAATTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTT  >  CP009273/4092072‑4092457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.