New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4092328	18 (1.040)	4 (0.240)	4/290	NT	22.1%	coding (711/984 nt)	kdgT	2‑keto‑3‑deoxy‑D‑gluconate transporter
	?	CP009273	= 4092542	11 (0.670)					coding (925/984 nt)	kdgT	2‑keto‑3‑deoxy‑D‑gluconate transporter

CCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACATAAAATAAATATGGTCTAATGGGGAAATTTCTCGTGGAGAGGGAACAGATGCGATATCCGGTTGATGTATACACAGGCAAGATTCAGGCTTATCCCGAAGGCAAACCCAGC  >  CP009273/4092381‑4092812                                                                                                                                                                  |                                                                                                                                                                                                                                                                               ccGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGAAAGGTGAAATAAACCTGCTTCCTTAAACCCAACAGCCGAAGGAACTAAGGTTCTAACGGtttttta                                                                                                                                                               >  2:298414/1‑271 (MQ=255)                                  cgGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTggt                                                                                                                                                                                                                                                                             >  2:124962‑M2/1‑129 (MQ=255)                                          acacCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCACACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATAGAGTACCGGCCTGGATACTAACAGCGAAAACAGCACgac                                                                                                                      >  1:105514/1‑273 (MQ=255)                                           cacCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGCTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGcc                                                                                                                      <  1:298425/274‑1 (MQ=255)                                                    tggtggCATAAATTGTGCCTGCGGTTAACCCGCTGCCTCCGGCCGCAACTTCGCTGTTAGCGACGGCGTTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTAAGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACataaaa                                                                                                            <  2:105512/270‑1 (MQ=255)                                                        tGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTggtca                                                                                                                                                                                                                                                                           <  1:164216‑M2/112‑6 (MQ=255)                                                            gAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTa                                                                                                                                                                                                                                                                       <  2:164212/112‑1 (MQ=255)                                                                  gTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACATAAAATAAAGAGGGtag                                                                                                >  2:51202/1‑271 (MQ=255)                                                                            ttAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACATAAAATAAATATGGTCTAATGGGGAAAt                                                                                     <  1:51203/274‑1 (MQ=255)                                                                                        cTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTggt                                                                                                                                                                                                                                                                             >  2:141625‑M2/1‑75 (MQ=255)                                                                                               atcaACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCNAAGCCAGANCAGCGAAAATCGCAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACATAAAATAAATATGTTCTAATGGGGAAATTTCTCGTGGAGAGGGAACAg                                                                 <  1:221901/273‑1 (MQ=255)                                                                                                      tCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTggtcacgataattactgccacacccaacaggatcc                                                                                                                                                                                                                                             <  2:40700‑M2/96‑36 (MQ=255)                                                                                                       cGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGGCAGAGCAGCGAANATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACATAAAATAAATATGGTCTAATGGGGAAACTTCTCGTGGAGATGGAACAGATGCGata                                                         <  1:235377/275‑1 (MQ=255)                                                                                                        gCTGGTGGGTACGGCGGTCATTGTGATTTTCATTCTTGTTCCAATTCTTCCCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCCAAGCCGGATGAACTAACGTTTGTCCGGTTTGCTATTGAGTTCCGGCCTGGATACTTACCGCGAAACCAGCACGCCTGACATAAAATAAATATGGTCTAATGGGGAAATTTCTCGTGGAGAGGGAACAGATGCGatat                                                        <  1:163138/275‑1 (MQ=255)                                                                                                        gCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTggtcacgataattactgccacacccaacaggatccccagcaaaccagtctgggcaatcacagtcaaatcaatggtattgcccagcgcgaaggcaaagaatggaatcagcgtttgcaccgctttgctgaaaaattctctc                                                                                                                                     <  2:248527‑M2/198‑140 (MQ=255)                                                                                                          tGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTggtcacgataattactgccacacccaacaggatccccag                                                                                                                                                                                                                                         >  1:40700‑M2/1‑57 (MQ=255)                                                                                                            gTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTggtcacgataattactgccacacccaacaggatccccagcaaaccagtctgggcaatcacagtcaaatcaatggtattgcccagcgcgaaggcaaagaatggaatcagcgtttgcaccgctttgctgaaaaattctcgcaatt                                                                                                                                 >  1:248535‑M2/1‑55 (MQ=255)                                                                                                                      cggTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCATGCCTGACATAAAATAAATATGGTCTAATGGGGAAATTTCTCGTGGAGAGGGAACAGATGAGATATCCGGTTGATGtata                                          >  1:330884/1‑275 (MQ=255)                                                                                                                               tgACTTCTATTCTGGTTCCAATTCGTACCTCTATCTGGTAACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGTTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTTGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGGCTGACAGAAAATAAATATGGTCTTATGGGGAAATTTCTCGTGGAGAGGGAACAGATGCGATATCCGGTTGATGTATCCACATGc                                   <  2:330872/273‑1 (MQ=255)                                                                                                                                                              tATCTGGTCACGTAAAGACAAAGCCAGAGCAGCGTAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAAATAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACATAAAATCAATATGGTCTAANGGGGAACTNTCTCGTGGAGAGGGAACAGATGCGACATCCGGATGATGTATAAACAGGAAAGATTCAAGCTTATACCGAAAGCAAACCCAgc  >  1:224003/1‑275 (MQ=255)                                                                                                                                                               aTCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCa                                                                                                                          >  2:244347/1‑154 (MQ=255)                                                                                                                                                                  |                                                                                                                                                                                                                                                                               CCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATCGAAATTTTAGGTACGGTGAAATAAACCTGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTGCTATTGAGTTCCTGCCTGGATACTTACCGCGAAAACAGCACGCCTGACATAAAATAAATATGGTCTAATGGGGAAATTTCTCGTGGAGAGGGAACAGATGCGATATCCGGTTGATGTATACACAGGCAAGATTCAGGCTTATCCCGAAGGCAAACCCAGC  >  CP009273/4092381‑4092812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.