New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4269828 =	24 (1.390)	4 (0.240)	3/288	NT	16.4%	intergenic (+72/‑80)	yjcD/yjcE	inner membrane putative guanine permease/putative cation/proton antiporter
	?	CP009273	4269898 =	18 (1.100)					intergenic (+142/‑10)	yjcD/yjcE	inner membrane putative guanine permease/putative cation/proton antiporter

GGTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATGCAAATCGCCATCGGTGCGCTACTGGCGTGGCCGACGTTTGGTTTGCATGTG  >  CP009273/4269577‑4270057                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                      cgcttGGGTATGGCTGGATGCATTGTCGTGGCCTTTAACATGGTATCTGGCTTCATGTTTGTGTTCGCGATTTTGGTGATTGGTCGTGTGGTGTCCGGCGAATGGCGCAAGTTGAGTATTGGTACGGGGGTTATGGGGGTAGAGATGGTGACATTCTATGCGAGTGGCAGTGCTATATAATCTTTCATAGGTTTCTGATAACGGGTGGCAATGGGTGCCCGTTTTTATGTTCTCCTAACATTGGGTGAGCGTTGGAGATATGCTAAATAAAATg                                                                                                                                                                                                                 <  2:103910/270‑1 (MQ=255)                                     caagtagTAACAGTCTGCATTGTCTGCTTCGCGACTCTTGTTATTGGTCGTCTGGTTTCCGGAGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATaaaaa                                                                                                                                                                            <  2:308483/269‑1 (MQ=255)                                         tCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCtttt                                                                                                                                                                                                                                     >  2:224256/1‑214 (MQ=255)                                             aaCAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTCTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGa                                                                                                                                                                                                                                 <  1:224262/214‑1 (MQ=255)                                                    atcatGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGGGAACGGGTGGCNATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGataata                                                                                                                                                                                >  1:308494/1‑256 (MQ=255)                                                                                 tGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTtct                                                                                                                                                                                         >  2:256480/1‑218 (MQ=255)                                                                                    tcgtcTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTAGCGATATTCTGANAAAAATGANAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGAt                                                                                                                              >  1:221499/1‑274 (MQ=255)                                                                                     cgtcTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGa                                                                                                                                                                                     <  1:256488/218‑1 (MQ=255)                                                                                                                 ccacgccagtagcgcaccgatggcgatttgcataagcggaagcgggatctgaaagggcatgacacgagtgaccaccccggacagcgagaccacgagggtcattatcagtatggtgaagaagatttccatgcgttccctgTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTtct                                                                                                                                                                                         <  2:296487‑M1/47‑1 (MQ=255)                                                                                                                     gccagtagcgcaccgatggcgatttgcataagctgaagcgggatctgaaagggcatgacacgagtgaccaccccggacagcgagaccacgagggtcattatcagtatggtgaagaagatttccatgcgttccctgTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGa                                                                                                                                                                                     >  1:296498‑M1/136‑186 (MQ=255)                                                                                                                                               cataagcggaagcgggatctgaaagggcatgacacgagtgaccaccccggacagcgagaccacgagggtcattatcagtatggtgaagaagatttccatgcgttccctgTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTtct                                                                                                                                                                                         <  2:234720‑M1/47‑1 (MQ=255)                                                                                                                                                   ggTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTATTTCTGAGATCATAAAAAACATCTCAAACAGGGAACGCATGGAAATCTTCTTCAcc                                                                                                                                      >  1:292438/1‑203 (MQ=255)                                                                                                                                                   agcggaagcgggatctgaaagggcatgacacgagtgaccaccccggacagcgagaccacgagggtcattatcagtatggtgaagaagatttccatgcgttccctgTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGa                                                                                                                                                                                     >  1:234727‑M1/106‑156 (MQ=255)                                                                                                                                                       acgtgcTATGCGGGTGGATGGGCTATCTAATCTTTCATCGGATTATGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATAc                                                                                                                                  <  2:292427/198‑1 (MQ=255)                                                                                                                                                                    gTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCttt                                                                                                                                                                                           >  2:121341/1‑133 (MQ=255)                                                                                                                                                                     tGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCACGTGGTCTCCCTGTCCGGGGTGGTCACTCGTTTCATGCCCTTTCAGATCACGCTTCCGCTTCTGCAAATCGcc                                            >  2:114767/1‑275 (MQ=255)                                                                                                                                                                        cTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCa                                                                                                                                                                                       <  1:121343/133‑1 (MQ=255)                                                                                                                                                                         tGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATACAGGCATAACGTCTTTCTCAGATCATAAAAAACATCACAAACAg                                                                                                                                                               >  2:330210/1‑156 (MQ=255)                                                                                                                                                                             cTATCTAATCTTTCATCGGATTCTGAAAACGGGTGTCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGTAAACAGGGaa                                                                                                                                                           <  1:330222/156‑1 (MQ=255)                                                                                                                                                                                              ggATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATGCTGAAAAGAATGTGTATTCAGGCATAACGTCTTtct                                                                                                                                                                                         <  1:229111/109‑1 (MQ=255)                                                                                                                                                                                                              tGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACACTCGTGGTCTCGCTGTCCgggg                                                                                                 >  2:135052/1‑181 (MQ=255)                                                                                                                                                                                                                gCAATTGCTTGCCGTTTTTATTTTCTCCGAACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATTACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATGCAAATCGCCATCGGTGCGCTACTGGCGTGGCCGACGTTTGGTTTGCAtgtg  <  1:114769/274‑1 (MQ=255)                                                                                                                                                                                                                  aaTGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGggtggt                                                                                             <  1:135054/181‑1 (MQ=255)                                                                                                                                                                                                                                         tcCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAgg                                                                                                                                                                                                       >  1:75414/1‑52 (MQ=255)                                                                                                                                                                                                                                           cGCACATTGTGTGAGCTTTTGTGATATTAGGAAAAAAATGAGAATTCAGGCATAACGTCt                                                                                                                                                                                             >  1:237473/1‑60 (MQ=255)                                                                                                                                                                                                                                             cacaTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATa                                                                                                                                                                                                   <  2:75412/52‑1 (MQ=255)                                                                                                                                                                                                                                               caTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGACTTCAGGCATAACGTCTTtct                                                                                                                                                                                         <  2:237466/60‑1 (MQ=255)                                                                                                                                                                                                                                                  tgtgtgAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCa                                                                                                                                                                                                     >  2:195735/1‑45 (MQ=255)                                                                                                                                                                                                                                                      tgAGCTTTTGCGATATTATGAAAAAAATGAGAATTCAGGCATAAc                                                                                                                                                                                                 <  1:195739/45‑1 (MQ=255)                                                                                                                                                                                                                                                          cTTTTGCGATATTCTGAAAAAAATGAGAATTCAgg                                                                                                                                                                                                       >  1:102635/1‑35 (MQ=255)                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                      GGTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATGCAAATCGCCATCGGTGCGCTACTGGCGTGGCCGACGTTTGGTTTGCATGTG  >  CP009273/4269577‑4270057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.