New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4269828 =	24 (1.390)	4 (0.240)	3/288	NT	16.4%	intergenic (+72/‑80)	yjcD/yjcE	inner membrane putative guanine permease/putative cation/proton antiporter
	?	CP009273	4269898 =	18 (1.100)					intergenic (+142/‑10)	yjcD/yjcE	inner membrane putative guanine permease/putative cation/proton antiporter

TCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATGCAAATCGCCATCGGTGCGCTACTGGCGTGGCCGACGTTTGGTTTGCATGTGGAGTTTGATCCTGAAC  >  CP009273/4269660‑4270073                                                                                                                                                                                                                                               |                                                                                                                                                                                tcgtcTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTAGCGATATTCTGANAAAAATGANAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGAt                                                                                                                                              >  1:221499/1‑274 (MQ=255)                                                                ggTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTATTTCTGAGATCATAAAAAACATCTCAAACAGGGAACGCATGGAAATCTTCTTCAcc                                                                                                                                                      >  1:292438/1‑203 (MQ=255)                                                                    acgtgcTATGCGGGTGGATGGGCTATCTAATCTTTCATCGGATTATGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATAc                                                                                                                                                  <  2:292427/198‑1 (MQ=255)                                                                                  tGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCACGTGGTCTCCCTGTCCGGGGTGGTCACTCGTTTCATGCCCTTTCAGATCACGCTTCCGCTTCTGCAAATCGcc                                                            >  2:114767/1‑275 (MQ=255)                                                                                      tGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATACAGGCATAACGTCTTTCTCAGATCATAAAAAACATCACAAACAg                                                                                                                                                                               >  2:330210/1‑156 (MQ=255)                                                                                          cTATCTAATCTTTCATCGGATTCTGAAAACGGGTGTCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGTAAACAGGGaa                                                                                                                                                                           <  1:330222/156‑1 (MQ=255)                                                                                                                           tGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACACTCGTGGTCTCGCTGTCCgggg                                                                                                                 >  2:135052/1‑181 (MQ=255)                                                                                                                             gCAATTGCTTGCCGTTTTTATTTTCTCCGAACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATTACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATGCAAATCGCCATCGGTGCGCTACTGGCGTGGCCGACGTTTGGTTTGCAtgtg                  <  1:114769/274‑1 (MQ=255)                                                                                                                               aaTGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGggtggt                                                                                                             <  1:135054/181‑1 (MQ=255)                                                                                                                                                                           TGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATcttctt                                                                                                                                                          <  2:23903‑M1/92‑1 (MQ=255)                                                                                                                                                                               ATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCAcc                                                                                                                                                      >  1:23903‑M1/1‑92 (MQ=255)                                                                                                                                                                                            tctgagaaagacgttatgcctgaattctcatttttttcagaatatcgcaaaCAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCccgcttccgct                                                                         >  1:234727‑M2/52‑156 (MQ=255)                                                                                                                                                                                            tctgagaaagacgttatgcctgaattctcatttttttcagaatatcgcaaaCAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCAGCTTATGCAAATCGCCATCGGTGCGCTACTGGc                                           >  1:296498‑M2/52‑186 (MQ=255)                                                                                                                                                                                                agaaagacgttatgcctgaattctcatttttttcagaatatcgcaaaCAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATg                                                                     <  2:234720‑M2/109‑1 (MQ=255)                                                                                                                                                                                                agaaagacgttatgcctgaattctcatttttttcagaatatcgcaaaCAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATGCAAATCGCCATCGGTGCGCTACTGGCGTgg                                       <  2:296487‑M2/139‑1 (MQ=255)                                                                                                                                                                                                agaATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACNTCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATGCAAATCGCCATCGGTGCGCTACTGGCGTGGCCGACGTGCGGTTTGCATGTGAAGTTTGATCCTGAAc  <  1:237145/223‑1 (MQ=255)                                                                                                                                                                                                                   tttCTCAGATCATAAAAAACATCGCAAACAGGGAACGCAt                                                                                                                                                                      >  2:196909/1‑40 (MQ=255)                                                                                                                                                                                                                   tttCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTc                                                                                                                                    >  1:39293/1‑74 (MQ=255)                                                                                                                                                                                                                   tttCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCccg                                                                                 >  2:196189/1‑125 (MQ=255)                                                                                                                                                                                                                     tctcAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCgggg                                                                                                                 >  1:284615/1‑91 (MQ=255)                                                                                                                                                                                                                       tcAGATCATAAAAAACATCGCAAACAGGGAACGCATGGaa                                                                                                                                                                  <  1:196914/40‑1 (MQ=255)                                                                                                                                                                                                                       tcAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTgg                                                                                                                                <  2:39293/74‑1 (MQ=255)                                                                                                                                                                                                                       tcAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCccgcttc                                                                             <  1:196193/125‑1 (MQ=255)                                                                                                                                                                                                                         aGATCAGAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGggtggt                                                                                                             <  2:284604/91‑1 (MQ=255)                                                                                                                                                                                                                                aaaaaaCATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATcc                                                                                   >  2:241715/1‑110 (MQ=255)                                                                                                                                                                                                                                    aaCATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCccgct                                                                               <  1:241723/110‑1 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                TCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTACGGTCGTTATCGCCGTGGCGCTGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCTTCCGCTTATGCAAATCGCCATCGGTGCGCTACTGGCGTGGCCGACGTTTGGTTTGCATGTGGAGTTTGATCCTGAAC  >  CP009273/4269660‑4270073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.